hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-17381731/chunk_1/iprscan-20090416-17381731.nocrc
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Query sequence: pf01112
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                     266.9      3e-79   1
PF00071.12.ls Ras family                                     268.8      1e-77   1
PF08477.3.fs Miro-like protein                               75.9    1.4e-21   1
PF08477.3.ls Miro-like protein                               77.7    3.4e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08477.3.fs   1/1      11   125 ..     1   139 []    75.9  1.4e-21
PF00071.12.fs   1/1      11   172 ..     1   174 []   266.9    3e-79
PF08477.3.ls   1/1      11   125 ..     1   139 []    77.7  3.4e-20
PF00071.12.ls   1/1      11   172 ..     1   174 []   268.8    1e-77

Alignments of top-scoring domains:
PF08477.3.fs: domain 1 of 1, from 11 to 125: score 75.9, E = 1.4e-21
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+v+iG+ gvGK+ l++++ ++ fp              + qg t++
     pf01112    11    KIVLIGNAGVGKTCLVRRFTQGLFP--------------PGQGATIG 43   

                   vd....tlevdgdtklenvrlkefllilwDtggreelkfehepiAymkta
                   vd   +t+e++g + +         l +wDt+g+e++ +  +       a
     pf01112    44 VDfmikTVEINGEKVK---------LQIWDTAGQERFRSITQSY--YRSA 82   

                   DavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   +a +l+yD + +eSf  +     wl+++++++++ + ++lvgnK+D   
     pf01112    83 NALILTYDITCEESFRCL---PEWLREIEQYASNKVITVLVGNKID    125  

PF00071.12.fs: domain 1 of 1, from 11 to 172: score 266.9, E = 3e-79
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+Vl+G+ GVGK++L+ RFt++ Fp+ + +TIGvDF +ktve++g++
     pf01112    11    KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 57   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   vkLqIWDTAGQErFr+++ +YYR A++ +L YDIT ++SF  ++ Wl+ei
     pf01112    58 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 107  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++a+  + v+ vLVGNK+DL++          R+Vs +++e++ +    
     pf01112   108 EQYAS--NKVITVLVGNKIDLAE---------RREVSQQRAEEFSEAQD- 145  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   + ++ETSAK+++NVe+ F++la +++    
     pf01112   146 MYYLETSAKESDNVEKLFLDLACRLIS    172  

PF08477.3.ls: domain 1 of 1, from 11 to 125: score 77.7, E = 3.4e-20
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k+v+iG+ gvGK+ l++++ ++ fp              + qg t++
     pf01112    11    KIVLIGNAGVGKTCLVRRFTQGLFP--------------PGQGATIG 43   

                   vd....tlevdgdtklenvrlkefllilwDtggreelkfehepiAymkta
                   vd   +t+e++g + +         l +wDt+g+e++ +  +       a
     pf01112    44 VDfmikTVEINGEKVK---------LQIWDTAGQERFRSITQSY--YRSA 82   

                   DavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   +a +l+yD + +eSf  +     wl+++++++++ + ++lvgnK+D   
     pf01112    83 NALILTYDITCEESFRCL---PEWLREIEQYASNKVITVLVGNKID    125  

PF00071.12.ls: domain 1 of 1, from 11 to 172: score 268.8, E = 1e-77
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+Vl+G+ GVGK++L+ RFt++ Fp+ + +TIGvDF +ktve++g++
     pf01112    11    KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 57   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   vkLqIWDTAGQErFr+++ +YYR A++ +L YDIT ++SF  ++ Wl+ei
     pf01112    58 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 107  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++a+  + v+ vLVGNK+DL++          R+Vs +++e++ +    
     pf01112   108 EQYAS--NKVITVLVGNKIDLAE---------RREVSQQRAEEFSEAQD- 145  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   + ++ETSAK+++NVe+ F++la +++    
     pf01112   146 MYYLETSAKESDNVEKLFLDLACRLIS    172  

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