hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-17381731/chunk_1/iprscan-20090416-17381731.nocrc
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Query sequence: pf01112
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00175                                                 311.4    6.4e-89   1
SM00173                                                 108.2    9.4e-28   1
SM00174                                                  53.8    1.4e-13   1
SM00176                                                  54.7    1.2e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00173     1/1       7   173 ..     1   167 []   108.2  9.4e-28
SM00175     1/1      10   173 ..     1   172 []   311.4  6.4e-89
SM00174     1/1      12   174 ..     1   180 []    53.8  1.4e-13
SM00176     1/1      15   194 ..     1   202 []    54.7  1.2e-11

Alignments of top-scoring domains:
SM00173: domain 1 of 1, from 7 to 173: score 108.2, E = 9.4e-28
                   *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIE.DSYrKqiei
                         +K+V  G  GVGK++L+ +F+qg F+     TI  D+  K +ei
     pf01112     7    DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGvDFMIKTVEI 53   

                   DgevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFeeikkf
                   +ge ++L+I DTAGQe F    + Y R+ +  +L Y it  +SF  + + 
     pf01112    54 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 103  

                   reqIlRVKdrddvPivLVGNKcDLeneRqVsteEGkeLAkqlncpFlEtS
                    + I     + +v  vLVGNK DL + R+Vs++ ++e ++  ++ +lEtS
     pf01112   104 LREIEQYASN-KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 152  

                   AKerinVdeaFydLVReirks<-*
                   AKe  nV++ F dL  +       
     pf01112   153 AKESDNVEKLFLDLACRLISE    173  

SM00175: domain 1 of 1, from 10 to 173: score 311.4, E = 6.4e-89
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                      FKi+lIG+ GVGK++L++RFt + F++ + +TIGVDF +kt+e++G 
     pf01112    10    FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 56   

                   rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlknWlke
                   +vKLQIWDTAGQERFRSiT+sYYR+A++ +L YDiT +eSF  l+ Wl+e
     pf01112    57 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE 106  

                   lreyadpppenvvimLVGNKsDLeeqRqVstEeaekficDcAeehgllFi
                   +++ya++    v+ +LVGNK+DL+e R+Vs ++ae+f    +e+  + ++
     pf01112   107 IEQYASN---KVITVLVGNKIDLAERREVSQQRAEEF----SEAQDMYYL 149  

                   fETSAKtntNVeeAFeelakkIlkr<-*
                    ETSAK++ NVe  F+ la+++++    
     pf01112   150 -ETSAKESDNVEKLFLDLACRLISE    173  

SM00174: domain 1 of 1, from 12 to 174: score 53.8, E = 1.4e-13
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTV.FENYsadvevpDgkp
                      +V++G  +VGKTCL  ++T++ FP     T++ + ++ +ve+ +g+ 
     pf01112    12    IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIgVDFMIKTVEI-NGEK 57   

                   vnLgLWDTAGQEdYDRLRPLS...YPqtDVfLiCFSVdspaSfeNVkeKW
                   v+L+ WDTAGQE   R R+  ++ Y  ++ +++ +++++ +Sf    e W
     pf01112    58 VKLQIWDTAGQE---RFRSITqsyYRSANALILTYDITCEESFRCLPE-W 103  

                   yPEvkhfcPn.vPiiLVGtKlDLRnDedtleelsekkqePvtteqGeans
                   + E+ +++ n+v  +LVG+K+DL  ++  + + + ++++     ++++  
     pf01112   104 LREIEQYASNkVITVLVGNKIDLA-ERREVSQQRAEEFS-----EAQD-- 145  

                   kialAkeIGAvkYlECSAltqeGvkeVF.eeAiraaLnk<-*
                             + YlE+SA+ +++v+  F + A r + ++   
     pf01112   146 ----------MYYLETSAKESDNVEKLFlDLACRLISEA    174  

SM00176: domain 1 of 1, from 15 to 194: score 54.7, E = 1.2e-11
                   *->vGDGGtGKttFvKRHLtGEFEKKYvatlGvEvHPLvFftnrGkirFn
                      +G  G GKt  v+R   G F     at+Gv+        n  k++  
     pf01112    15    IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 61   

                   vWDtAGqEKFGGLRDGYYiqgqCAiimFDvtaRvtYKnvPnWHRDLvRvC
                   +WDtAGqE+F  +   YY  +   i+ +D+t    ++  P+W R++    
     pf01112    62 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 111  

                   EniPi.vLCGnKvDvKdRkvKAKqit..FHRKKnLqYYdisAKsnYnFEK
                    n  i+vL GnK+D+ +R+   +q  ++F   + + Y + sAK   n EK
     pf01112   112 SNKVItVLVGNKIDLAERREVSQQRAeeFSEAQDMYYLETSAKESDNVEK 161  

                   PFLyLARKLlGDpnLeFvamPALAPPEvqlDiAlaakyEkDLeaAaaaaL
                    FL LA +L+ +                           + L +    +L
     pf01112   162 LFLDLACRLISEA------------------------RQNTLVNNVSSPL 187  

                   PDddDDdl<-*
                   P  +   +   
     pf01112   188 PG-EGKSI    194  

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