hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-04551351/chunk_1/iprscan-20080813-04551351.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf01683 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00414.8.fs Neuraxin and MAP1B repeat 263.3 2.3e-85 11 PF00414.8.ls Neuraxin and MAP1B repeat 285.2 1.1e-82 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00183.9.fs 1/1 839 864 .. 525 550 .] 2.5 1.2 PF02818.5.ls 1/1 1310 1335 .. 1 28 [] 1.9 10 PF00414.8.ls 2/11 1893 1909 .. 1 17 [] 27.6 4e-05 PF00414.8.fs 2/11 1893 1909 .. 1 17 [] 25.6 1.7e-07 PF00414.8.fs 3/11 1910 1926 .. 1 17 [] 31.3 2.5e-09 PF00414.8.ls 3/11 1910 1926 .. 1 17 [] 33.2 8.1e-07 PF00414.8.ls 4/11 1927 1943 .. 1 17 [] 26.6 8.1e-05 PF00414.8.fs 4/11 1927 1943 .. 1 17 [] 24.6 3.7e-07 PF00414.8.fs 5/11 1944 1960 .. 1 17 [] 32.6 9.2e-10 PF00414.8.ls 5/11 1944 1960 .. 1 17 [] 34.6 3.3e-07 PF00414.8.fs 6/11 1961 1977 .. 1 17 [] 25.3 2.2e-07 PF00414.8.ls 6/11 1961 1977 .. 1 17 [] 27.3 5e-05 PF00414.8.fs 7/11 1978 1994 .. 1 17 [] 29.9 6.8e-09 PF00414.8.ls 7/11 1978 1994 .. 1 17 [] 31.9 2.1e-06 PF00414.8.fs 8/11 2012 2028 .. 1 17 [] 25.1 2.7e-07 PF00414.8.ls 8/11 2012 2028 .. 1 17 [] 27.1 6e-05 PF00414.8.fs 9/11 2029 2045 .. 1 17 [] 13.4 0.0018 PF00414.8.fs 10/11 2046 2062 .. 1 17 [] 30.1 5.9e-09 PF00414.8.ls 10/11 2046 2062 .. 1 17 [] 32.1 1.8e-06 PF00414.8.fs 11/11 2063 2079 .. 1 17 [] 23.0 1.3e-06 Alignments of top-scoring domains: PF00183.9.fs: domain 1 of 1, from 839 to 864: score 2.5, E = 1.2 *->eveeaeveetepaeedaedskmEevD<-* e e + +++ e++++d e+ k+EevD pf01683 839 EAERSLMSSPEDLTKDFEELKAEEVD 864 PF02818.5.ls: domain 1 of 1, from 1310 to 1335: score 1.9, E = 10 *->PPpKVPEvPKkvVpEEKvpvpvpkkeea<-* +P+ PEv ++vV+E + p+ k e+ pf01683 1310 APVS-PEVTQEVVEE-HCASPEDKTLEV 1335 PF00414.8.ls: domain 2 of 11, from 1893 to 1909: score 27.6, E = 4e-05 *->TTrtPddsgYsYEttEK<-* TTr+Pd+++Y+YE++EK pf01683 1893 TTRSPDEEDYDYESYEK 1909 PF00414.8.fs: domain 2 of 11, from 1893 to 1909: score 25.6, E = 1.7e-07 *->TTrtPddsgYsYEttEK<-* TTr+Pd+++Y+YE++EK pf01683 1893 TTRSPDEEDYDYESYEK 1909 PF00414.8.fs: domain 3 of 11, from 1910 to 1926: score 31.3, E = 2.5e-09 *->TTrtPddsgYsYEttEK<-* TTrt+d++gY+YE++E+ pf01683 1910 TTRTSDVGGYYYEKIER 1926 PF00414.8.ls: domain 3 of 11, from 1910 to 1926: score 33.2, E = 8.1e-07 *->TTrtPddsgYsYEttEK<-* TTrt+d++gY+YE++E+ pf01683 1910 TTRTSDVGGYYYEKIER 1926 PF00414.8.ls: domain 4 of 11, from 1927 to 1943: score 26.6, E = 8.1e-05 *->TTrtPddsgYsYEttEK<-* TT++P dsgYsYEt+ K pf01683 1927 TTKSPSDSGYSYETIGK 1943 PF00414.8.fs: domain 4 of 11, from 1927 to 1943: score 24.6, E = 3.7e-07 *->TTrtPddsgYsYEttEK<-* TT++P dsgYsYEt+ K pf01683 1927 TTKSPSDSGYSYETIGK 1943 PF00414.8.fs: domain 5 of 11, from 1944 to 1960: score 32.6, E = 9.2e-10 *->TTrtPddsgYsYEttEK<-* TT+tP+d++YsYE++EK pf01683 1944 TTKTPEDGDYSYEIIEK 1960 PF00414.8.ls: domain 5 of 11, from 1944 to 1960: score 34.6, E = 3.3e-07 *->TTrtPddsgYsYEttEK<-* TT+tP+d++YsYE++EK pf01683 1944 TTKTPEDGDYSYEIIEK 1960 PF00414.8.fs: domain 6 of 11, from 1961 to 1977: score 25.3, E = 2.2e-07 *->TTrtPddsgYsYEttEK<-* TTrtP+++gYsY ++EK pf01683 1961 TTRTPEEGGYSYDISEK 1977 PF00414.8.ls: domain 6 of 11, from 1961 to 1977: score 27.3, E = 5e-05 *->TTrtPddsgYsYEttEK<-* TTrtP+++gYsY ++EK pf01683 1961 TTRTPEEGGYSYDISEK 1977 PF00414.8.fs: domain 7 of 11, from 1978 to 1994: score 29.9, E = 6.8e-09 *->TTrtPddsgYsYEttEK<-* TT++P++sgYsYE+tE+ pf01683 1978 TTSPPEVSGYSYEKTER 1994 PF00414.8.ls: domain 7 of 11, from 1978 to 1994: score 31.9, E = 2.1e-06 *->TTrtPddsgYsYEttEK<-* TT++P++sgYsYE+tE+ pf01683 1978 TTSPPEVSGYSYEKTER 1994 PF00414.8.fs: domain 8 of 11, from 2012 to 2028: score 25.1, E = 2.7e-07 *->TTrtPddsgYsYEttEK<-* +++t++d++YsYEttEK pf01683 2012 GGHTLGDPSYSYETTEK 2028 PF00414.8.ls: domain 8 of 11, from 2012 to 2028: score 27.1, E = 6e-05 *->TTrtPddsgYsYEttEK<-* +++t++d++YsYEttEK pf01683 2012 GGHTLGDPSYSYETTEK 2028 PF00414.8.fs: domain 9 of 11, from 2029 to 2045: score 13.4, E = 0.0018 *->TTrtPddsgYsYEttEK<-* +T+ P+ +gYsYEt+ K pf01683 2029 ITSFPESEGYSYETSTK 2045 PF00414.8.fs: domain 10 of 11, from 2046 to 2062: score 30.1, E = 5.9e-09 *->TTrtPddsgYsYEttEK<-* TTrtPd+s+Y+YEt+EK pf01683 2046 TTRTPDTSTYCYETAEK 2062 PF00414.8.ls: domain 10 of 11, from 2046 to 2062: score 32.1, E = 1.8e-06 *->TTrtPddsgYsYEttEK<-* TTrtPd+s+Y+YEt+EK pf01683 2046 TTRTPDTSTYCYETAEK 2062 PF00414.8.fs: domain 11 of 11, from 2063 to 2079: score 23.0, E = 1.3e-06 *->TTrtPddsgYsYEttEK<-* +TrtP++s+YsYEt++ pf01683 2063 ITRTPQASTYSYETSDL 2079 //