# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opf02319.fasta.nr -Q pf02319.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pf02319, 106 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842848 sequences Expectation_n fit: rho(ln(x))= 4.6763+/-0.000176; mu= 6.6008+/- 0.010 mean_var=54.3599+/-10.663, 0's: 44 Z-trim: 45 B-trim: 0 in 0/65 Lambda= 0.173954 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088914|dbj|BAD92904.1| Putative p150 variant ( 106) 717 187.1 3.7e-46 gi|4884126|emb|CAB43270.1| hypothetical protein [H ( 138) 372 100.6 5.3e-20 gi|74141432|dbj|BAE35993.1| unnamed protein produc ( 500) 372 100.9 1.5e-19 gi|148686949|gb|EDL18896.1| ribosomal protein S6 k ( 629) 372 101.0 1.8e-19 gi|149408606|ref|XP_001506738.1| PREDICTED: simila ( 716) 372 101.0 2e-19 gi|194038250|ref|XP_001926266.1| PREDICTED: simila ( 722) 372 101.0 2e-19 gi|148686950|gb|EDL18897.1| ribosomal protein S6 k ( 781) 372 101.1 2.2e-19 gi|126282277|ref|XP_001371293.1| PREDICTED: simila ( 789) 372 101.1 2.2e-19 gi|26328137|dbj|BAC27809.1| unnamed protein produc ( 798) 372 101.1 2.2e-19 gi|33638111|gb|AAQ24165.1| ribosomal protein S6 ki ( 798) 372 101.1 2.2e-19 gi|37999482|sp|O75582|KS6A5_HUMAN Ribosomal protei ( 802) 372 101.1 2.2e-19 gi|75070437|sp|Q5R4K3.1|KS6A5_PONAB Ribosomal prot ( 802) 372 101.1 2.2e-19 gi|3818592|gb|AAC69577.1| ribosome S6 protein kina ( 809) 372 101.1 2.2e-19 gi|149737588|ref|XP_001494401.1| PREDICTED: riboso ( 852) 372 101.1 2.3e-19 gi|148686948|gb|EDL18895.1| ribosomal protein S6 k ( 854) 372 101.1 2.3e-19 gi|37999676|sp|Q8C050|KS6A5_MOUSE Ribosomal protei ( 863) 372 101.1 2.3e-19 gi|114654449|ref|XP_001140389.1| PREDICTED: simila ( 894) 372 101.1 2.4e-19 gi|148686947|gb|EDL18894.1| ribosomal protein S6 k ( 912) 372 101.1 2.4e-19 gi|109084673|ref|XP_001088246.1| PREDICTED: simila (1054) 372 101.1 2.7e-19 gi|73964393|ref|XP_547953.2| PREDICTED: similar to ( 806) 363 98.8 1.1e-18 gi|194671102|ref|XP_580522.4| PREDICTED: ribosomal ( 945) 357 97.3 3.4e-18 gi|82231192|sp|Q5F3L1|KS6A5_CHICK Ribosomal protei ( 789) 337 92.3 9.6e-17 gi|47221231|emb|CAG13167.1| unnamed protein produc ( 785) 314 86.5 5.2e-15 gi|189531032|ref|XP_693550.3| PREDICTED: similar t ( 811) 300 83.0 6.1e-14 gi|90080640|dbj|BAE89801.1| unnamed protein produc ( 398) 231 65.5 5.6e-09 gi|109105573|ref|XP_001114844.1| PREDICTED: simila ( 524) 231 65.6 7e-09 gi|119594668|gb|EAW74262.1| ribosomal protein S6 k ( 524) 230 65.3 8.3e-09 gi|28839796|gb|AAH47896.1| RPS6KA4 protein [Homo s ( 524) 230 65.3 8.3e-09 gi|149062192|gb|EDM12615.1| ribosomal protein S6 k ( 699) 231 65.6 8.8e-09 gi|148701306|gb|EDL33253.1| ribosomal protein S6 k ( 763) 231 65.7 9.5e-09 gi|109105571|ref|XP_001114860.1| PREDICTED: simila ( 766) 231 65.7 9.5e-09 gi|109105569|ref|XP_001114877.1| PREDICTED: simila ( 772) 231 65.7 9.6e-09 gi|15277982|gb|AAH12964.1| Ribosomal protein S6 ki ( 773) 231 65.7 9.6e-09 gi|37999846|sp|Q9Z2B9|KS6A4_MOUSE Ribosomal protei ( 773) 231 65.7 9.6e-09 gi|74185755|dbj|BAE32757.1| unnamed protein produc ( 773) 231 65.7 9.6e-09 gi|3411161|gb|AAC67395.1| mitogen- and stress-acti ( 705) 230 65.4 1.1e-08 gi|194391190|dbj|BAG60713.1| unnamed protein produ ( 709) 230 65.4 1.1e-08 gi|194218404|ref|XP_001916656.1| PREDICTED: simila ( 762) 230 65.4 1.1e-08 gi|62898854|dbj|BAD97281.1| ribosomal protein S6 k ( 765) 230 65.4 1.1e-08 gi|119594667|gb|EAW74261.1| ribosomal protein S6 k ( 766) 230 65.4 1.1e-08 gi|37999483|sp|O75676|KS6A4_HUMAN Ribosomal protei ( 772) 230 65.4 1.1e-08 gi|73983738|ref|XP_854926.1| PREDICTED: similar to ( 772) 230 65.4 1.1e-08 gi|114638230|ref|XP_508900.2| PREDICTED: similar t ( 901) 230 65.5 1.3e-08 gi|126343800|ref|XP_001380631.1| PREDICTED: simila ( 632) 223 63.6 3.3e-08 gi|47221835|emb|CAG08889.1| unnamed protein produc ( 798) 224 63.9 3.3e-08 gi|123231821|emb|CAM15832.1| novel protein similar ( 745) 216 61.9 1.3e-07 gi|125817622|ref|XP_690448.2| PREDICTED: hypotheti ( 786) 216 61.9 1.3e-07 gi|117167899|gb|AAI24882.1| Rps6ka4 protein [Xenop ( 765) 208 59.9 5.2e-07 gi|149591280|ref|XP_001508194.1| PREDICTED: simila ( 253) 202 58.1 6e-07 gi|115940443|ref|XP_001183738.1| PREDICTED: hypoth ( 903) 188 54.9 1.9e-05 >>gi|62088914|dbj|BAD92904.1| Putative p150 variant [Hom (106 aa) initn: 717 init1: 717 opt: 717 Z-score: 983.9 bits: 187.1 E(): 3.7e-46 Smith-Waterman score: 717; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGA 10 20 30 40 50 60 70 80 90 100 pf0231 AVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHLK :::::::::::::::::::::::::::::::::::::::::::::: gi|620 AVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHLK 70 80 90 100 >>gi|4884126|emb|CAB43270.1| hypothetical protein [Homo (138 aa) initn: 372 init1: 372 opt: 372 Z-score: 514.3 bits: 100.6 E(): 5.3e-20 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:1-56) 10 20 30 40 50 60 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGA .:::::::::::::::::::::::::::::::::::::::::::: gi|488 QGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGA 10 20 30 40 70 80 90 100 pf0231 AVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHLK ::::::::::: gi|488 AVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKKTSTSTETRSSSSESSHSSSSH 50 60 70 80 90 100 >>gi|74141432|dbj|BAE35993.1| unnamed protein product [M (500 aa) initn: 372 init1: 372 opt: 372 Z-score: 506.2 bits: 100.9 E(): 1.5e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:366-421) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|741 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 340 350 360 370 380 390 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|741 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTE 400 410 420 430 440 450 >>gi|148686949|gb|EDL18896.1| ribosomal protein S6 kinas (629 aa) initn: 372 init1: 372 opt: 372 Z-score: 504.7 bits: 101.0 E(): 1.8e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:495-550) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|148 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 470 480 490 500 510 520 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|148 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTE 530 540 550 560 570 580 >>gi|149408606|ref|XP_001506738.1| PREDICTED: similar to (716 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.9 bits: 101.0 E(): 2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:582-637) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|149 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 560 570 580 590 600 610 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|149 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKKTSTSTE 620 630 640 650 660 670 >>gi|194038250|ref|XP_001926266.1| PREDICTED: similar to (722 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.8 bits: 101.0 E(): 2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:588-643) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|194 VEIMKKIKRGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 560 570 580 590 600 610 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|194 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKKTSTSTE 620 630 640 650 660 670 >>gi|148686950|gb|EDL18897.1| ribosomal protein S6 kinas (781 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.4 bits: 101.1 E(): 2.2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:647-702) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|148 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 620 630 640 650 660 670 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|148 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTE 680 690 700 710 720 730 >>gi|126282277|ref|XP_001371293.1| PREDICTED: similar to (789 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.3 bits: 101.1 E(): 2.2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:656-711) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|126 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 630 640 650 660 670 680 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|126 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKKTSTSTE 690 700 710 720 730 740 >>gi|26328137|dbj|BAC27809.1| unnamed protein product [M (798 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.2 bits: 101.1 E(): 2.2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:664-719) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|263 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 640 650 660 670 680 690 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|263 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTE 700 710 720 730 740 750 >>gi|33638111|gb|AAQ24165.1| ribosomal protein S6 kinase (798 aa) initn: 372 init1: 372 opt: 372 Z-score: 503.2 bits: 101.1 E(): 2.2e-19 Smith-Waterman score: 372; 98.214% identity (100.000% similar) in 56 aa overlap (16-71:664-719) 10 20 30 40 pf0231 TMFKMTNHKIKISIPKGLLTVDPNKRLKMSGLRYNEWLQDGSQLS .::::::::::::::::::::::::::::: gi|336 VEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLS 640 650 660 670 680 690 50 60 70 80 90 100 pf0231 SNPLMTPDILGSSGAAVHTCVKATFHVRPCALYMLGGLSRNHNQMFLLCSLRYVFFVSHL :::::::::::::::::::::::::: gi|336 SNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTE 700 710 720 730 740 750 106 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 05:06:36 2008 done: Wed Aug 13 05:09:42 2008 Total Scan time: 496.340 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]