hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16523510/chunk_1/iprscan-20090618-16523510.nocrc
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Query sequence: pf02338
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.ls C2 domain                                       10.4      0.025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.ls   1/1    1646  1737 ..     1    88 []    10.4    0.025

Alignments of top-scoring domains:
PF00168.20.ls: domain 1 of 1, from 1646 to 1737: score 10.4, E = 0.025
                   *->LrVtvieAknLppkDk.....kngksDPYVkvylggdkkdqk..kkT
                      +++ v +A +L  k ++ +++k + +++ V +   +      ++  T
     pf02338  1646    VSILVERAMHLSLKGSplterKVSIPSCCVSFATAD----ESspVYT 1688 

                   kvikktlNPvWN....EtFtFevpppdlqetLeieVyDydrfgrddflGe
                    v+++t +P+WN +++  +  e+ +++ q  L+++V++++      ++G 
     pf02338  1689 QVVENTDSPIWNfqqqSRLSKELLLDPQQT-LVFKVWHKGDE--ERVIGF 1735 

                   vs<-*
                   +s   
     pf02338  1736 AS    1737 

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