hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16523510/chunk_1/iprscan-20090618-16523510.nocrc
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Query sequence: pf02338
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  49.7      4e-10   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/5     548   686 ..     1    92 []     2.9       35
SM00239    2/5     815   924 ..     1    92 []     9.6      6.7
SM00239    3/5    1014  1154 ..     1    92 []     7.8       10
SM00239    4/5    1207  1346 ..     1    92 []     1.8       47
SM00239    5/5    1645  1752 ..     1    92 []    27.5   0.0019

Alignments of top-scoring domains:
SM00239: domain 1 of 5, from 548 to 686: score 2.9, E = 35
                   *->tLtvkiisArnLp..........................DPYVkvs.
                           ii+  + p++++  ++++++  +++++ ++ +++  +V+ + 
     pf02338   548    HSVRIIIETMGVPpdspqmtpgkksyagpppkvttakkrTFFVEYHf 594  

                   .....................kTkvvkktlsgfNPvWnEesetFeFevpp
                   + + + ++ +++   +   +  ++ +++       ++ +    F+F+v+ 
     pf02338   595 pvgfsesglgktalitevvrlASSKITDG----KVKFQQ---RFVFPVQF 637  

                   ..........s.LeieVyDk.......dfiGrvtippnnahqhsadglih
                   +++  ++  +s+L++++y k+++ +++++iG v+++              
     pf02338   638 ggpmiehwwnSnLTFQIYVKktpqkkpEVIGSVSLS-------------- 673  

                   lsell.ggrh.kl<-*
                   l+ +++++  +     
     pf02338   674 LRAVIqSELLsFS    686  

SM00239: domain 2 of 5, from 815 to 924: score 9.6, E = 6.7
                   *->tLtvkiisArnLp..........DPYVkvs........kTkvvkktl
                       + +++  +++ +++ + + ++ + Y   +  ++   +++ +  +t 
     pf02338   815    HVLLMVPDGKDFIsgesekqspcNVYLNCKlfsteevtRSVIAWGTT 861  

                   sgfNPvWnEesetFeFevpp..........s.LeieVyDk.......dfi
                       Pv+n    + +++v+ +++  ++ +++ ++ie ++k ++++ ++++
     pf02338   862 ---QPVFNF---SQVIPVSLsskylerlknNvMVIETWNKvrspgqdKLL 905  

                   Grvtippnnahqhsadglihlsell.ggrh.kl<-*
                   G v +p              l +   ++++ k    
     pf02338   906 GLVKLP--------------LHQFYmSFKDaKI    924  

SM00239: domain 3 of 5, from 1014 to 1154: score 7.8, E = 10
                   *->tLtvkiisArnLp..........DPYVkvs.................
                       ++++i   ++L +   +  +  D+YV  + + ++++++  +++   
     pf02338  1014    CFEIHIEMVKGLAplqatvwgeaDCYVQYYfpvqhsqssvlkgpefl 1060 

                   .........kTkvvkktlsgfNPvWnEesetFeFevpp............
                    ++ + ++ +T +  +      P++n    + + ++  + + + ++   +
     pf02338  1061 engitlkpfRTATTLCVP---DPIFNS---EHHHSLLLpaevpvqrllls 1104 

                   ..........s.LeieVyDk........dfiGrvtippnnahqhsadgli
                     + ++  ++ ++++e++ +   ++ +++ + + t+p             
     pf02338  1105 afsaqglvpgGgVQFEIWCRyyypnvrdQKVAKGTLP------------- 1141 

                   hlsell.ggrh.kl<-*
                    ls+++    +++    
     pf02338  1142 -LSRICaMVTTqHR    1154 

SM00239: domain 4 of 5, from 1207 to 1346: score 1.8, E = 47
                   *->tLtvkiisArnLp.....................DPYVkvs......
                      ++ v ii+A +L    +    + +    + + + +  V+ + +  ++
     pf02338  1207    SISVQIIRACGLQaaakalaerepalqfsatvgvNASVTTHlsflpq 1253 

                   ....kTkvvkktlsgfNPvWnEesetFeFevpp.................
                   + +++T+ v ++    +P++ +   ++eF+++  +++ +++     +  +
     pf02338  1254 geqrRTHPVACSF---CPEFSH---HVEFTCNLvtqhcsgeacflaelle 1297 

                   .s.LeieVyDk................dfiGrvtippnnahqhsadglih
                    +++++ Vy++++++ ++  + ++ ++ ++G v +p              
     pf02338  1298 fAeVIFAVYHEntksasdiisiesckeYLLGVVKVP-------------- 1333 

                   lsell.ggrh.kl<-*
                    +ell           
     pf02338  1334 TKELLiKRSGiTG    1346 

SM00239: domain 5 of 5, from 1645 to 1752: score 27.5, E = 0.0019
                   *->tLtvkiisArnLp............DPYVkvs..........kTkvv
                       + + + +A +L  ++++ + ++ + P + vs  + + +++  T vv
     pf02338  1645    AVSILVERAMHLSlkgsplterkvsIPSCCVSfatadesspvYTQVV 1691 

                   kktlsgfNPvWnEesetFeFevpp.......s.LeieVyDk....dfiGr
                   ++t    +P+Wn    + +  ++ +   +++++L+++V++k++++++iG 
     pf02338  1692 ENTD---SPIWNF---QQQSRLSKellldpqQtLVFKVWHKgdeeRVIGF 1735 

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++++              ls ll+g+        
     pf02338  1736 ASVD--------------LSPLLsGFQFvCG    1752 

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