hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-05155671/chunk_1/iprscan-20080813-05155671.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf02435 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09068.1.ls EF hand 285.5 9.3e-83 1 PF09068.1.fs EF hand 283.6 3.6e-82 1 PF09069.1.ls EF-hand 213.5 4.4e-61 1 PF09069.1.fs EF-hand 211.6 1.7e-60 1 PF00569.8.fs Zinc finger, ZZ type 46.3 4.7e-12 1 PF00569.8.ls Zinc finger, ZZ type 48.2 2.5e-11 1 PF00435.11.fs Spectrin repeat 39.6 3e-11 2 PF00397.16.fs WW domain 37.3 1.8e-09 1 PF00397.16.ls WW domain 39.3 1.2e-08 1 PF00435.11.ls Spectrin repeat 34.3 3.8e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/1 235 341 .. 1 111 [] 34.3 3.8e-07 PF00435.11.fs 2/2 235 341 .. 1 111 [] 32.4 4e-09 PF00397.16.fs 1/1 358 387 .. 1 30 [] 37.3 1.8e-09 PF00397.16.ls 1/1 358 387 .. 1 30 [] 39.3 1.2e-08 PF09068.1.ls 1/1 388 508 .. 1 127 [] 285.5 9.3e-83 PF09068.1.fs 1/1 388 508 .. 1 127 [] 283.6 3.6e-82 PF09069.1.fs 1/1 512 603 .. 1 94 [] 211.6 1.7e-60 PF09069.1.ls 1/1 512 603 .. 1 94 [] 213.5 4.4e-61 PF00569.8.fs 1/1 608 653 .. 1 46 [] 46.3 4.7e-12 PF00569.8.ls 1/1 608 653 .. 1 46 [] 48.2 2.5e-11 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 1, from 235 to 341: score 34.3, E = 3.8e-07 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++l + q +++l ++++e + ++e ++ ++++ ++ + pf02435 235 EQLLEIQGAMEELSTTLSQAEGVRaTWEPIGDLFIDSLPEHIQ--AI 279 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k++++e + ++d v+ +n +la +L+i+ h ++ e ++ le++n rW+ pf02435 280 KLFKEEFSPMKDGVKLVN--DLAHQLAISDVHLSM-ENSQALEQINVRWK 326 qLlelaaeRkqkLee<-* qL++ + eR ++L++ pf02435 327 QLQASVSERLKQLQD 341 PF00435.11.fs: domain 2 of 2, from 235 to 341: score 32.4, E = 4e-09 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++l + q +++l ++++e + ++e ++ ++++ ++ + pf02435 235 EQLLEIQGAMEELSTTLSQAEGVRaTWEPIGDLFIDSLPEHIQ--AI 279 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k++++e + ++d v+ +n +la +L+i+ h ++ e ++ le++n rW+ pf02435 280 KLFKEEFSPMKDGVKLVN--DLAHQLAISDVHLSM-ENSQALEQINVRWK 326 qLlelaaeRkqkLee<-* qL++ + eR ++L++ pf02435 327 QLQASVSERLKQLQD 341 PF00397.16.fs: domain 1 of 1, from 358 to 387: score 37.3, E = 1.8e-09 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ +We++++p++ pYY+Nh+ +tT W++P pf02435 358 VQVPWERAISPNKVPYYINHQAQTTCWDHP 387 PF00397.16.ls: domain 1 of 1, from 358 to 387: score 39.3, E = 1.2e-08 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ +We++++p++ pYY+Nh+ +tT W++P pf02435 358 VQVPWERAISPNKVPYYINHQAQTTCWDHP 387 PF09068.1.ls: domain 1 of 1, from 388 to 508: score 285.5, E = 9.3e-83 *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie kMtEL+q L aDLNnI+FSAYRTAmKLRr+QKaL+LDL+ l++a e pf02435 388 KMTELYQTL--ADLNNIKFSAYRTAMKLRRVQKALRLDLVTLTTALE 432 aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl +F++h+L+ +++++dV+e+i+cLt+lYe+Le+ e+++lVnVplcVD+ pf02435 433 IFNEHDLQ--ASEHVMDVVEVIHCLTALYERLEE--ERGILVNVPLCVDM 478 cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-* LNWLLNV+D++RsGk+r+LSfK+g+++LC pf02435 479 SLNWLLNVFDSGRSGKMRALSFKTGIACLC 508 PF09068.1.fs: domain 1 of 1, from 388 to 508: score 283.6, E = 3.6e-82 *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie kMtEL+q L aDLNnI+FSAYRTAmKLRr+QKaL+LDL+ l++a e pf02435 388 KMTELYQTL--ADLNNIKFSAYRTAMKLRRVQKALRLDLVTLTTALE 432 aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl +F++h+L+ +++++dV+e+i+cLt+lYe+Le+ e+++lVnVplcVD+ pf02435 433 IFNEHDLQ--ASEHVMDVVEVIHCLTALYERLEE--ERGILVNVPLCVDM 478 cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-* LNWLLNV+D++RsGk+r+LSfK+g+++LC pf02435 479 SLNWLLNVFDSGRSGKMRALSFKTGIACLC 508 PF09069.1.fs: domain 1 of 1, from 512 to 603: score 211.6, E = 1.7e-60 *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS +++K++YlFsqv++s +++dqr+lg LLh+aiq+PrqlGEva+FGgS pf02435 512 VKEKLQYLFSQVANSGSQCDQRHLGVLLHEAIQVPRQLGEVAAFGGS 558 NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-* N+EpSVrSCF+++++kp Iea+qFL+w++lE PQS+VWL+vLHR+ pf02435 559 NVEPSVRSCFRFSTGKPVIEASQFLEWVNLE--PQSMVWLAVLHRVT 603 PF09069.1.ls: domain 1 of 1, from 512 to 603: score 213.5, E = 4.4e-61 *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS +++K++YlFsqv++s +++dqr+lg LLh+aiq+PrqlGEva+FGgS pf02435 512 VKEKLQYLFSQVANSGSQCDQRHLGVLLHEAIQVPRQLGEVAAFGGS 558 NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-* N+EpSVrSCF+++++kp Iea+qFL+w++lE PQS+VWL+vLHR+ pf02435 559 NVEPSVRSCFRFSTGKPVIEASQFLEWVNLE--PQSMVWLAVLHRVT 603 PF00569.8.fs: domain 1 of 1, from 608 to 653: score 46.3, E = 4.7e-12 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++ +C +C +pi g+RY++l+ ++ D+Cq Cf+tG+ +++ k pf02435 608 VKHQTKCSICRQCPIKGFRYRSLKQFNVDICQTCFLTGRASKGNKL 653 -* pf02435 - - PF00569.8.ls: domain 1 of 1, from 608 to 653: score 48.2, E = 2.5e-11 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++ +C +C +pi g+RY++l+ ++ D+Cq Cf+tG+ +++ k pf02435 608 VKHQTKCSICRQCPIKGFRYRSLKQFNVDICQTCFLTGRASKGNKL 653 -* pf02435 - - //