hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-05155671/chunk_1/iprscan-20080813-05155671.nocrc
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Query sequence: pf02435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00291                                                  66.8    2.7e-15   1
SM00150                                                  61.4    1.1e-13   2
SM00456                                                  41.3    1.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00150    1/2     109   231 ..     1   104 []    26.3   0.0042
SM00150    2/2     238   340 ..     1   104 []    35.1  9.4e-06
SM00456    1/1     357   389 ..     1    34 []    41.3  1.3e-07
SM00291    1/1     608   653 ..     1    46 []    66.8  2.7e-15

Alignments of top-scoring domains:
SM00150: domain 1 of 2, from 109 to 231: score 26.3, E = 0.0042
                   *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale
                       +++  ++e+++Wl+ k ++l ++ +l   +D++ v++  + H a++
     pf02435   109    GKLQLPLQEIIDWLSQKDeELSAQLPLQ--GDVALVQQEKETHAAFM 153  

                   aelaaheervdalnelgeqLiee.......sghpdaeeIeerl.......
                   +e++ +++ + ++ e +++++++++ ++ ++ h ++++   +++ ++ ++
     pf02435   154 EEVKSRGPYIYSVLESAQAFLSQhpfeeleEPHSESKDTSPKQriqnlsr 203  

                   ......eelnerWeeLlelaeeRrqkLe<-*
                      ++ +   e We+L +++ +++++ e   
     pf02435   204 fvwkqaTVASELWEKLTARCVDQHRHIE    231  

SM00150: domain 2 of 2, from 238 to 340: score 35.1, E = 9.4e-06
                   *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale
                       + + +++el   l+ +e++ ++ e++g +  ++s+ + ++  + ++
     pf02435   238    LEIQGAMEELSTTLSQAEgVRATWEPIG-DLFIDSLPEHIQAIKLFK 283  

                   aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela
                   +e +  ++ v+ +n+l+ qL  +   + + e  + le++n rW++L++ +
     pf02435   284 EEFSPMKDGVKLVNDLAHQLAIS-DVHLSMENSQALEQINVRWKQLQASV 332  

                   eeRrqkLe<-*
                    eR ++L+   
     pf02435   333 SERLKQLQ    340  

SM00456: domain 1 of 1, from 357 to 389: score 41.3, E = 1.3e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +++ +We++++p+ + pYY+Nh+ ++t+W++P +   
     pf02435   357    SVQVPWERAISPN-KVPYYINHQAQTTCWDHPKM    389  

SM00291: domain 1 of 1, from 608 to 653: score 66.8, E = 2.7e-15
                   *->vhhsvsCdgCgkepivgvRYkClvCpDYDLCesCfakGghhgeHam<
                      v+h+ +C++C+++pi g+RY++l+ ++ D+C++Cf +G++++ +++ 
     pf02435   608    VKHQTKCSICRQCPIKGFRYRSLKQFNVDICQTCFLTGRASKGNKL  653  

                   -*
                     
     pf02435     -    -    

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