hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-17105205/chunk_1/iprscan-20090416-17105205.nocrc
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Query sequence: pf02676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04054.5.ls CCR4-Not complex component, Not1               988.8   1.8e-294   1
PF04054.5.fs CCR4-Not complex component, Not1               986.9     7e-294   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04054.5.fs   1/1    2005  2385 .]     1   415 []   986.9   7e-294
PF04054.5.ls   1/1    2005  2385 .]     1   415 []   988.8 1.8e-294

Alignments of top-scoring domains:
PF04054.5.fs: domain 1 of 1, from 2005 to 2385: score 986.9, E = 7e-294
                   *->sllsELatirthdaedilesitrqelvsilsaFlntFsgylhaLqPr
                      +ll+EL+     ++e++le+i    ++++l+aF+ntF    h+L+P+
     pf02676  2005    MLLLELN-----APEHVLETI----NFQTLTAFCNTF----HILRPT 2038 

                   afCPgFsFAWleLiSHRmlLprlLantGiaetvpnqKgwplyaqLLiDLl
                   ++ PgF++AWleLiSHR++++r+La+      +p+qKgwp+yaqLLiDL+
     pf02676  2039 KA-PGFVYAWLELISHRIFIARMLAH------TPQQKGWPMYAQLLIDLF 2081 

                   KFLdPFLrnaelgkpvqlLYKGTLRVLLVLLHDFPeFLcdyHYelcdvIP
                   K+L+PFLrn+el+kp+q+LYKGTLRVLLVLLHDFPeFLcdyHY++cdvIP
     pf02676  2082 KYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP 2131 

                   pnCvQLRNlILSAFPrnMrLPDPFtpnLKqVdmLPEikeaPkilssvvas
                   pnC+QLRNlILSAFPrnMrLPDPFtpnLK VdmL+Ei++aP+il+++ ++
     pf02676  2132 PNCIQLRNLILSAFPRNMRLPDPFTPNLK-VDMLSEINIAPRILTNF-TG 2179 

                   lepkqlkkDLDeYLksRkpNvtFlseLrtelqvssdiKkGvgydgtryns
                   ++p+q+kkDLD+YLk+R+p vtFls+Lr++lqvs++  +     g+ryn+
     pf02676  2180 VMPPQFKKDLDSYLKTRSP-VTFLSDLRSNLQVSNE--P-----GNRYNL 2221 

                   kLiNaLVLyvGiqAIahieaKrassntvnitkSsymdifqnLavdlDtEg
                   +LiNaLVLyvG+qAIahi++K++++++++it+S++mdifqnLavdlDtEg
     pf02676  2222 QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 2271 

                   RYllLnAIANQLRYPNsHThYFSCvlLYLFkesenedQkLaIQEQITRVL
                   RYl+LnAIANQLRYPNsHThYFSC++LYLF+e+++e    aIQEQITRVL
     pf02676  2272 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTE----AIQEQITRVL 2317 

                   LERLIVNRPHPWGLLITFiELIKNpdYnFWkhpFvkcaPEIekLFqsvar
                   LERLIVNRPHPWGLLITFiELIKNp+++FW+h+Fv+caPEIekLFqsva+
     pf02676  2318 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQ 2367 

                   scmaasssqqvmqsegae<-*
                   +cm+++++qqvm+++ga+   
     pf02676  2368 CCMGQKQAQQVMEGTGAS    2385 

PF04054.5.ls: domain 1 of 1, from 2005 to 2385: score 988.8, E = 1.8e-294
                   *->sllsELatirthdaedilesitrqelvsilsaFlntFsgylhaLqPr
                      +ll+EL+     ++e++le+i    ++++l+aF+ntF    h+L+P+
     pf02676  2005    MLLLELN-----APEHVLETI----NFQTLTAFCNTF----HILRPT 2038 

                   afCPgFsFAWleLiSHRmlLprlLantGiaetvpnqKgwplyaqLLiDLl
                   ++ PgF++AWleLiSHR++++r+La+      +p+qKgwp+yaqLLiDL+
     pf02676  2039 KA-PGFVYAWLELISHRIFIARMLAH------TPQQKGWPMYAQLLIDLF 2081 

                   KFLdPFLrnaelgkpvqlLYKGTLRVLLVLLHDFPeFLcdyHYelcdvIP
                   K+L+PFLrn+el+kp+q+LYKGTLRVLLVLLHDFPeFLcdyHY++cdvIP
     pf02676  2082 KYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP 2131 

                   pnCvQLRNlILSAFPrnMrLPDPFtpnLKqVdmLPEikeaPkilssvvas
                   pnC+QLRNlILSAFPrnMrLPDPFtpnLK VdmL+Ei++aP+il+++ ++
     pf02676  2132 PNCIQLRNLILSAFPRNMRLPDPFTPNLK-VDMLSEINIAPRILTNF-TG 2179 

                   lepkqlkkDLDeYLksRkpNvtFlseLrtelqvssdiKkGvgydgtryns
                   ++p+q+kkDLD+YLk+R+p vtFls+Lr++lqvs++  +     g+ryn+
     pf02676  2180 VMPPQFKKDLDSYLKTRSP-VTFLSDLRSNLQVSNE--P-----GNRYNL 2221 

                   kLiNaLVLyvGiqAIahieaKrassntvnitkSsymdifqnLavdlDtEg
                   +LiNaLVLyvG+qAIahi++K++++++++it+S++mdifqnLavdlDtEg
     pf02676  2222 QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 2271 

                   RYllLnAIANQLRYPNsHThYFSCvlLYLFkesenedQkLaIQEQITRVL
                   RYl+LnAIANQLRYPNsHThYFSC++LYLF+e+++e    aIQEQITRVL
     pf02676  2272 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTE----AIQEQITRVL 2317 

                   LERLIVNRPHPWGLLITFiELIKNpdYnFWkhpFvkcaPEIekLFqsvar
                   LERLIVNRPHPWGLLITFiELIKNp+++FW+h+Fv+caPEIekLFqsva+
     pf02676  2318 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQ 2367 

                   scmaasssqqvmqsegae<-*
                   +cm+++++qqvm+++ga+   
     pf02676  2368 CCMGQKQAQQVMEGTGAS    2385 

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