hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-05304268/chunk_1/iprscan-20080813-05304268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf02857 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 314.4 1.9e-91 15 PF00400.22.fs WD domain, G-beta repeat 293.9 2.9e-85 16 PF05729.3.fs NACHT domain 203.5 5.8e-60 1 PF05729.3.ls NACHT domain 205.4 1.2e-58 1 PF05731.2.fs TROVE domain 34.7 1.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05731.2.fs 1/1 1 26 [. 539 564 .] 34.7 1.3e-09 PF05729.3.fs 1/1 511 686 .. 1 205 [] 203.5 5.8e-60 PF05729.3.ls 1/1 511 686 .. 1 205 [] 205.4 1.2e-58 PF00400.22.ls 3/15 1091 1129 .. 1 38 [] 30.8 4.6e-06 PF00400.22.fs 3/16 1091 1129 .. 1 38 [] 28.8 3.9e-07 PF00400.22.fs 4/16 1146 1170 .. 13 38 .] 17.8 0.00049 PF00400.22.ls 6/15 1216 1254 .. 1 38 [] 28.1 3e-05 PF00400.22.fs 6/16 1216 1254 .. 1 38 [] 26.1 2.2e-06 PF00400.22.fs 9/16 1344 1380 .. 1 38 [] 12.8 0.012 PF00400.22.ls 10/15 1393 1431 .. 1 38 [] 45.4 1.8e-10 PF00400.22.fs 10/16 1393 1431 .. 1 38 [] 43.4 2.8e-11 PF00400.22.ls 11/15 1438 1476 .. 1 38 [] 31.5 2.8e-06 PF00400.22.fs 11/16 1438 1476 .. 1 38 [] 29.5 2.4e-07 PF00400.22.ls 12/15 1480 1516 .. 1 38 [] 38.3 2.5e-08 PF00400.22.fs 12/16 1480 1516 .. 1 38 [] 36.3 2.9e-09 PF00400.22.fs 13/16 1519 1566 .. 1 38 [] 19.6 0.00015 PF00400.22.ls 13/15 1519 1566 .. 1 38 [] 21.6 0.0027 PF00400.22.ls 14/15 1570 1608 .. 1 38 [] 36.4 9.3e-08 PF00400.22.fs 14/16 1570 1608 .. 1 38 [] 34.4 1e-08 Alignments of top-scoring domains: PF05731.2.fs: domain 1 of 1, from 1 to 26: score 34.7, E = 1.3e-09 *->ildRYRQALEqAfylaVfkNvpplgg<-* +l+RYRQALE+A++l+V++++p l+g pf02857 1 MLNRYRQALETAVNLSVKHSLPLLPG 26 PF05729.3.fs: domain 1 of 1, from 511 to 686: score 203.5, E = 5.8e-60 *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr r++++ G++G+GKT++l++l+++++ ++ ++a ++vFf++ + +++ pf02857 511 RLSLVTGQSGQGKTAFLASLVSALQAPDGAKVA-PLVFFHFSGARPD 556 sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL +g a++lLr+L+++L++q+ ep+a +++ ++++++el++rlL pf02857 557 QGLALTLLRRLCTYLRGQLKEPGALPST---------YRSLVWELQQRLL 597 .kSa.lllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLss +kSa++l+pgqt+vli+DG+D l++q+gq L+s+ pf02857 598 pKSAeSLHPGQTQVLIIDGADRLVDQNGQ-----------------LISD 630 LlrkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrk +++kkL+++++l+l++++da l+++le++q+a++l+++++ ++r+ pf02857 631 WIPKKLPRCVHLVLSVSSDAG----LGETLEQSQGAHVLALGPLEASARA 676 eyvrkyfsde<-* ++vr+ ++ + pf02857 677 RLVREELALY 686 PF05729.3.ls: domain 1 of 1, from 511 to 686: score 205.4, E = 1.2e-58 *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr r++++ G++G+GKT++l++l+++++ ++ ++a ++vFf++ + +++ pf02857 511 RLSLVTGQSGQGKTAFLASLVSALQAPDGAKVA-PLVFFHFSGARPD 556 sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL +g a++lLr+L+++L++q+ ep+a +++ ++++++el++rlL pf02857 557 QGLALTLLRRLCTYLRGQLKEPGALPST---------YRSLVWELQQRLL 597 .kSa.lllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLss +kSa++l+pgqt+vli+DG+D l++q+gq L+s+ pf02857 598 pKSAeSLHPGQTQVLIIDGADRLVDQNGQ-----------------LISD 630 LlrkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrk +++kkL+++++l+l++++da l+++le++q+a++l+++++ ++r+ pf02857 631 WIPKKLPRCVHLVLSVSSDAG----LGETLEQSQGAHVLALGPLEASARA 676 eyvrkyfsde<-* ++vr+ ++ + pf02857 677 RLVREELALY 686 PF00400.22.ls: domain 3 of 15, from 1091 to 1129: score 30.8, E = 4.6e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + ++H+ +t ++ spd ++lla+ + g++k+Wd pf02857 1091 GCRVlQTkAHQYQITGCCLSPD-CQLLATVCLGGCLKLWD 1129 PF00400.22.fs: domain 3 of 16, from 1091 to 1129: score 28.8, E = 3.9e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + ++H+ +t ++ spd ++lla+ + g++k+Wd pf02857 1091 GCRVlQTkAHQYQITGCCLSPD-CQLLATVCLGGCLKLWD 1129 PF00400.22.fs: domain 4 of 16, from 1146 to 1170: score 17.8, E = 0.00049 *->tcvafspdsgpllasgSrDgtikiWd<-* +cvaf+p+ g+++a+gS+ g+i + pf02857 1146 NCVAFHPE-GQVIATGSWAGSISFFQ 1170 PF00400.22.ls: domain 6 of 15, from 1216 to 1254: score 28.1, E = 3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g + +++H ++V + f + g++l+++++Dg++ +W+ pf02857 1216 GARLaAFpAHHGFVAAALFLHA-GCQLLTAGEDGKVQVWS 1254 PF00400.22.fs: domain 6 of 16, from 1216 to 1254: score 26.1, E = 2.2e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g + +++H ++V + f + g++l+++++Dg++ +W+ pf02857 1216 GARLaAFpAHHGFVAAALFLHA-GCQLLTAGEDGKVQVWS 1254 PF00400.22.fs: domain 9 of 16, from 1344 to 1380: score 12.8, E = 0.012 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + l+ +++V +a s++ llas+S+D t+ +W pf02857 1344 LQSLwLLsRFQKPVLGLATSQE---LLASASEDFTVQLWP 1380 PF00400.22.ls: domain 10 of 15, from 1393 to 1431: score 45.4, E = 1.8e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c ++l+gH+++V+c++fs d g la+g+rD+++ Wd pf02857 1393 FPCGtELrGHEGPVSCCSFSTD-GGSLATGGRDRSLLCWD 1431 PF00400.22.fs: domain 10 of 16, from 1393 to 1431: score 43.4, E = 2.8e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c ++l+gH+++V+c++fs d g la+g+rD+++ Wd pf02857 1393 FPCGtELrGHEGPVSCCSFSTD-GGSLATGGRDRSLLCWD 1431 PF00400.22.ls: domain 11 of 15, from 1438 to 1476: score 31.5, E = 2.8e-06 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++++ H ++Vt +a+ d +ll+s+S+Dg++ +Wd pf02857 1438 PVLIhSFpaCHRDWVTGCAWTKD--NLLISCSSDGSVGLWD 1476 PF00400.22.fs: domain 11 of 16, from 1438 to 1476: score 29.5, E = 2.4e-07 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++++ H ++Vt +a+ d +ll+s+S+Dg++ +Wd pf02857 1438 PVLIhSFpaCHRDWVTGCAWTKD--NLLISCSSDGSVGLWD 1476 PF00400.22.ls: domain 12 of 15, from 1480 to 1516: score 38.3, E = 2.5e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ ++ + gH+s+V++va + + +++s SrDgt+k+Wd pf02857 1480 GQRLgQFlGHQSAVSAVAAVEE---HVVSVSRDGTLKVWD 1516 PF00400.22.fs: domain 12 of 16, from 1480 to 1516: score 36.3, E = 2.9e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ ++ + gH+s+V++va + + +++s SrDgt+k+Wd pf02857 1480 GQRLgQFlGHQSAVSAVAAVEE---HVVSVSRDGTLKVWD 1516 PF00400.22.fs: domain 13 of 16, from 1519 to 1566: score 19.6, E = 0.00015 *->geck.vl.gHtstVtcvafspd........sgpllasgSrDgtikiW g ++++++H+++++ +a + ++ +++ ++s l+++ + Dg ++W pf02857 1519 GVELtSIpAHSGPISHCAAAMEpraagqpgSELLVVTVGLDGATRLW 1565 d<-* + pf02857 1566 H 1566 PF00400.22.ls: domain 13 of 15, from 1519 to 1566: score 21.6, E = 0.0027 *->geck.vl.gHtstVtcvafspd........sgpllasgSrDgtikiW g ++++++H+++++ +a + ++ +++ ++s l+++ + Dg ++W pf02857 1519 GVELtSIpAHSGPISHCAAAMEpraagqpgSELLVVTVGLDGATRLW 1565 d<-* + pf02857 1566 H 1566 PF00400.22.ls: domain 14 of 15, from 1570 to 1608: score 36.4, E = 9.3e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++l gH+++V++ a+s + l++++S+Dg++++W pf02857 1570 VCQThTLlGHSGPVRAAAVSET-SGLMLTASEDGSVRLWQ 1608 PF00400.22.fs: domain 14 of 16, from 1570 to 1608: score 34.4, E = 1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++l gH+++V++ a+s + l++++S+Dg++++W pf02857 1570 VCQThTLlGHSGPVRAAAVSET-SGLMLTASEDGSVRLWQ 1608 //