hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-05304268/chunk_1/iprscan-20080813-05304268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf02857 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 358.5 4.1e-103 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/17 1006 1046 .. 1 46 [] 16.9 1 SM00320 2/17 1049 1087 .. 1 46 [] 15.5 1.7 SM00320 3/17 1090 1129 .. 1 46 [] 32.0 8.1e-05 SM00320 4/17 1130 1170 .. 1 46 [] 24.0 0.022 SM00320 5/17 1173 1212 .. 1 46 [] 10.1 12 SM00320 6/17 1215 1254 .. 1 46 [] 26.9 0.0027 SM00320 7/17 1260 1297 .. 1 46 [] 11.7 7 SM00320 8/17 1300 1338 .. 1 46 [] 9.0 18 SM00320 9/17 1343 1380 .. 1 46 [] 17.5 0.83 SM00320 10/17 1392 1431 .. 1 46 [] 45.3 8.1e-09 SM00320 11/17 1437 1476 .. 1 46 [] 42.8 4.5e-08 SM00320 12/17 1479 1516 .. 1 46 [] 32.3 6.5e-05 SM00320 13/17 1518 1566 .. 1 46 [] 14.6 2.4 SM00320 14/17 1569 1608 .. 1 46 [] 38.9 6.9e-07 SM00320 15/17 1611 1650 .. 1 46 [] 18.3 0.62 SM00320 16/17 1651 1688 .. 1 46 [] 0.8 3.6e+02 SM00320 17/17 1701 1740 .. 1 46 [] 1.7 2.7e+02 Alignments of top-scoring domains: SM00320: domain 1 of 17, from 1006 to 1046: score 16.9, E = 1 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl ++++ ++l+ + ++ + t+vafs +g ++ a+g +gt++l pf02857 1006 KnQQSSSLSlAVSS--SPTAVAFSTNG------QRAAVGTaNGTVYL 1044 Wd<-* d pf02857 1045 LD 1046 SM00320: domain 2 of 17, from 1049 to 1087: score 15.5, E = 1.7 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd t++ ++ + +++++ f +d+ +l++++ Dg + lWd pf02857 1049 TwQEEKSVVSGCD--GISACLFLSDD------TLFLTAFDGLLELWD 1087 <-* pf02857 - - SM00320: domain 3 of 17, from 1090 to 1129: score 32.0, E = 8.1e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + k+H+ +t+++ spd +lla+ + g+++lW pf02857 1090 HgCRVLQTKAHQY--QITGCCLSPDC------QLLATVClGGCLKLW 1128 d<-* d pf02857 1129 D 1129 SM00320: domain 4 of 17, from 1130 to 1170: score 24.0, E = 0.022 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t + ++ Ht +++ ++vaf+p g +++a+gs+ g+i ++ pf02857 1130 TvRGQLAFQ-HTYPKSLNCVAFHPEG------QVIATGSwAGSISFF 1169 d<-* pf02857 1170 Q 1170 SM00320: domain 5 of 17, from 1173 to 1212: score 10.1, E = 12 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW k+++ l + + +++++af+ g ++a+g D+ + lW pf02857 1173 GlKVTKDLGAPGA--SIRTLAFNVPG------GVVAVGRlDSMVELW 1211 d<-* pf02857 1212 A 1212 SM00320: domain 6 of 17, from 1215 to 1254: score 26.9, E = 0.0027 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ l+ +++H g V + f + g +l+++++Dg++ +W pf02857 1215 EgARLAAFPAHHG--FVAAALFLHAG------CQLLTAGeDGKVQVW 1253 d<-* + pf02857 1254 S 1254 SM00320: domain 7 of 17, from 1260 to 1297: score 11.7, E = 7 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs..Dgtirl ++ l +l+ + p +sva spdg +++a+g + Dg ir+ pf02857 1260 PrGHLGSLS--LS--PALSVALSPDG------DRVAVGYraDG-IRI 1295 Wd<-* ++ pf02857 1296 YK 1297 SM00320: domain 8 of 17, from 1300 to 1338: score 9.0, E = 18 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++ + ++ + +V+++a+ + ++l+sg +Dg++ W pf02857 1300 SgSQGAQGQALDV--AVSALAWLSP-------KVLVSGAeDGSLQGW 1337 d<-* pf02857 1338 A 1338 SM00320: domain 9 of 17, from 1343 to 1380: score 17.5, E = 0.83 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + l l+ ++ pV+++a s+ llas+s+D t+ lW pf02857 1343 SlQSLWLLSRFQK--PVLGLATSQE--------LLASASeDFTVQLW 1379 d<-* pf02857 1380 P 1380 SM00320: domain 10 of 17, from 1392 to 1431: score 45.3, E = 8.1e-09 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + +l+gH+g pV++++fs dg la+g++D+++ +W pf02857 1392 DfPCGTELRGHEG--PVSCCSFSTDG------GSLATGGrDRSLLCW 1430 d<-* d pf02857 1431 D 1431 SM00320: domain 11 of 17, from 1437 to 1476: score 42.8, E = 4.5e-08 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl t+ l+++++ +H++ +Vt++a+ d nll+s+s+Dg++ l pf02857 1437 TpVLIHSFPaCHRD--WVTGCAWTKD-------NLLISCSsDGSVGL 1474 Wd<-* Wd pf02857 1475 WD 1476 SM00320: domain 12 of 17, from 1479 to 1516: score 32.3, E = 6.5e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ l + gH++ +V++va +++s s+Dgt+++W pf02857 1479 SgQRLGQFLGHQS--AVSAVAAVEE--------HVVSVSrDGTLKVW 1515 d<-* d pf02857 1516 D 1516 SM00320: domain 13 of 17, from 1518 to 1566: score 14.6, E = 2.4 *->t.kllrtlkgHtgespVtsvafspdggss...dspnllasgs.Dgti ++ l ++++H+g p++++a + ++++s+ l+++ + Dg pf02857 1518 QgVELTSIPAHSG--PISHCAAAMEPRAAgqpGSELLVVTVGlDGAT 1562 rlWd<-* rlW+ pf02857 1563 RLWH 1566 SM00320: domain 14 of 17, from 1569 to 1608: score 38.9, E = 6.9e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++tl gH+g pV++ a+s ++ l++++s+Dg++rlW pf02857 1569 LvCQTHTLLGHSG--PVRAAAVSETS------GLMLTASeDGSVRLW 1607 d<-* pf02857 1608 Q 1608 SM00320: domain 15 of 17, from 1611 to 1650: score 18.3, E = 0.62 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ++ ++ +Vt+va+ pdg ++ +sg + g + lW pf02857 1611 KeADDTCIPRSSA--AVTAVAWAPDG------SMAVSGNqAGELILW 1649 d<-* pf02857 1650 Q 1650 SM00320: domain 16 of 17, from 1651 to 1688: score 0.8, E = 3.6e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + k ++t ++ + + ++ +s+ + +++ s D +i W pf02857 1651 EaKAVATAQAPGH---IGALIWSSA-------HTFFVLSaDEKISEW 1687 d<-* pf02857 1688 Q 1688 SM00320: domain 17 of 17, from 1701 to 1740: score 1.7, E = 2.7e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + l r+l+ g ts+++ pdg ++l+ + D ++ + pf02857 1701 SlHLNRILQEDLG--VLTSLDWAPDG------HFLILAKaDLKLLCM 1739 d<-* + pf02857 1740 K 1740 //