hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-05364186/chunk_1/iprscan-20080813-05364186.nocrc
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Query sequence: pf02859
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  169.6    9.5e-50   1
PF00620.17.ls RhoGAP domain                                  170.5    3.9e-48   1
PF00169.19.fs PH domain                                       26.6    1.2e-07   1
PF00169.19.ls PH domain                                       27.9    3.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1     269   366 ..     1    87 [.    26.6  1.2e-07
PF00169.19.ls   1/1     269   371 ..     1    92 []    27.9  3.3e-05
PF00620.17.fs   1/1     391   545 ..     2   155 .]   169.6  9.5e-50
PF00620.17.ls   1/1     391   545 ..     1   155 []   170.5  3.9e-48

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 269 to 366: score 26.6, E = 1.2e-07
                   *->vikeGwLlkkg...gkkswkkRyfvLfd..dvLlyykdkk..kkpkg
                      +++eG+L+ +++   + sw k+y+    ++++L++   ++++  ++g
     pf02859   269    PTIEGYLYTQEkwaLGISWVKYYCQYEKetKTLTMTPMEQkpGAKQG 315  

                   sipLsgi.qvtkvpdn.krkncFeirt.dr.etlllqaeseeerkeWvka
                    ++L     v++ +++ ++++cF i t++r+ t++lqa se  r+ W++a
     pf02859   316 PLDLTLKyCVRRKTESiDKRFCFDIETnERpGTITLQALSEANRRLWMEA 365  

                   i<-*
                   +   
     pf02859   366 M    366  

PF00169.19.ls: domain 1 of 1, from 269 to 371: score 27.9, E = 3.3e-05
                   *->vikeGwLlkkg...gkkswkkRyfvLfd..dvLlyykdkk..kkpkg
                      +++eG+L+ +++   + sw k+y+    ++++L++   ++++  ++g
     pf02859   269    PTIEGYLYTQEkwaLGISWVKYYCQYEKetKTLTMTPMEQkpGAKQG 315  

                   sipLsgi.qvtkvpdn.krkncFeirt.dr.etlllqaeseeerkeWvka
                    ++L     v++ +++ ++++cF i t++r+ t++lqa se  r+ W++a
     pf02859   316 PLDLTLKyCVRRKTESiDKRFCFDIETnERpGTITLQALSEANRRLWMEA 365  

                   iqsair<-*
                   +        
     pf02859   366 MDGKEP    371  

PF00620.17.fs: domain 1 of 1, from 391 to 545: score 169.6, E = 9.5e-50
                   *->livekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl..
                      ++v+kCi+ +e +G++tEG+yR  Gs  ++++L +af   + + + +
     pf02859   391    KFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDvd 437  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                   ++ ++ d+ +++s LK +LR+L eP++t++l++e++  aaks++ + rl 
     pf02859   438 FHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVS-AAKSDNLDYRLG 486  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   a++ l++kLP+ Nr+ L+ L++hL++V+++s++N+Mt++N +++FgPtL+
     pf02859   487 AIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLM 536  

                   rppdgdsad<-*
                   r ++++ a    
     pf02859   537 RAQEDTVAA    545  

PF00620.17.ls: domain 1 of 1, from 391 to 545: score 170.5, E = 3.9e-48
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.
                       ++v+kCi+ +e +G++tEG+yR  Gs  ++++L +af   + + + 
     pf02859   391    -KFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDv 436  

                   .ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerl
                   +++ ++ d+ +++s LK +LR+L eP++t++l++e++  aaks++ + rl
     pf02859   437 dFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVS-AAKSDNLDYRL 485  

                   ealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL
                    a++ l++kLP+ Nr+ L+ L++hL++V+++s++N+Mt++N +++FgPtL
     pf02859   486 GAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTL 535  

                   lrppdgdsad<-*
                   +r ++++ a    
     pf02859   536 MRAQEDTVAA    545  

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