hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-05364186/chunk_1/iprscan-20080813-05364186.nocrc
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Query sequence: pf02859
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 225.8    3.8e-63   1
SM00233                                                  40.5    2.3e-07   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     269   373 ..     1    82 []    40.5  2.3e-07
SM00324     1/1     387   564 ..     1   193 []   225.8  3.8e-63

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 269 to 373: score 40.5, E = 2.3e-07
                   *->vikeGwLlkks....k.swkkryfvLfn..gvLlyyksk....kpkg
                      +++eG+L+ +++   + sw k+y+    ++++L+ +  ++++++++g
     pf02859   269    PTIEGYLYTQEkwalGiSWVKYYCQYEKetKTLTMTPMEqkpgAKQG 315  

                   sipLsgcsvre.p........cFeivt.dr..tlllqAeseeereeWvea
                   +++L+   +++++ ++ +++ cF i t++r++t++lqA se  r+ W+ea
     pf02859   316 PLDLTLKYCVRrKtesidkrfCFDIETnERpgTITLQALSEANRRLWMEA 365  

                   lqsaiaka<-*
                   +      +   
     pf02859   366 MDGKEPIY    373  

SM00324: domain 1 of 1, from 387 to 564: score 225.8, E = 3.8e-63
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                          ++v+kCi+ +e+ G++teG+YR  Gs+ +v++L++af  ++ +
     pf02859   387    EVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCp 433  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                    + +         ++ +++d+ ++++ LK yLR+L eP++t++l++e+++
     pf02859   434 GDVD---------FHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVS 474  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   aak+              ++ + rl a++ l+++LP+ nr++L++L++HL
     pf02859   475 AAKS--------------DNLDYRLGAIHSLVYKLPEKNREMLELLIrHL 510  

                   nrVaehsevNkMtarNLAivFgPtLlrpp......ltdikhqnkvvetli
                    +V+ehs++N+Mt++N++++FgPtL+r ++++   ++ ik+qn+vve+li
     pf02859   511 VNVCEHSKENLMTPSNMGVIFGPTLMRAQedtvaaMMNIKFQNIVVEILI 560  

                   enad<-*
                   e+     
     pf02859   561 EHFG    564  

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