hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-05550794/chunk_1/iprscan-20080813-05550794.nocrc
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Query sequence: pf03445
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.fs Fibronectin type III domain                     92.0    8.9e-26   2
PF00041.11.ls Fibronectin type III domain                     96.0      1e-25   2
PF00629.13.fs MAM domain                                      33.4    1.2e-08   1
PF00047.15.fs Immunoglobulin domain                           25.6    2.9e-06   1
PF00047.15.ls Immunoglobulin domain                           27.5    4.4e-05   1
PF07679.6.ls Immunoglobulin I-set domain                      4.0    0.00051   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00629.13.fs   1/1      17    46 ..   148   180 .]    33.4  1.2e-08
PF07679.6.ls   1/1      48   140 ..     1    96 []     4.0  0.00051
PF00047.15.ls   1/1      61   124 ..     1    65 []    27.5  4.4e-05
PF00047.15.fs   1/1      61   124 ..     1    65 []    25.6  2.9e-06
PF00041.11.fs   1/2     143   229 ..     1    84 []    41.9  2.2e-11
PF00041.11.ls   1/2     143   229 ..     1    84 []    43.9  5.1e-10
PF00041.11.ls   2/2     344   435 ..     1    84 []    52.1  1.7e-12
PF00041.11.fs   2/2     344   435 ..     1    84 []    50.1  9.3e-14

Alignments of top-scoring domains:
PF00629.13.fs: domain 1 of 1, from 17 to 46: score 33.4, E = 1.2e-08
                   *->qviFEgvrglpgsaGdIAlDDIsindis.gpCpe<-*
                      +viFE++++ +g +G+IA+DDI    + ++pC +   
     pf03445    17    KVIFEAEVS-GGRSGYIAIDDIQ---VLsYPCDK    46   

PF07679.6.ls: domain 1 of 1, from 48 to 140: score 4.0, E = 0.00051
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVs....WfKd..Gqpl
                      P+F++ + dveV+ G+ a+f+C +tG    +  +++ W+  ++G+++
     pf03445    48    PHFLR-LGDVEVNAGQNATFQCIATGR---DAVhnklWLQRrnGEDI 90   

                   ssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaea
                   ++  + ++ ++ +       ++++ ++v++ D  +Y+Cv + +++  ++ 
     pf03445    91 PV--AQTKNINHRRFA----ASFRLQEVTKTDQDLYRCVTQSErGSGVSN 134  

                   saeLtV<-*
                    a+L+V   
     pf03445   135 FAQLIV    140  

PF00047.15.ls: domain 1 of 1, from 61 to 124: score 27.5, E = 4.4e-05
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ +t++C ++g   ++ ++ ++r +++ ++  +++   ++    + 
     pf03445    61    GQNATFQCIATGRDAVHNKLWLQRRNGeDIpVAQTKNINHRRFAAS- 106  

                   tsLtitnvtpeDggtYtCvv<-*
                     +++++vt+ D + Y+Cv    
     pf03445   107 --FRLQEVTKTDQDLYRCVT    124  

PF00047.15.fs: domain 1 of 1, from 61 to 124: score 25.6, E = 2.9e-06
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ +t++C ++g   ++ ++ ++r +++ ++  +++   ++    + 
     pf03445    61    GQNATFQCIATGRDAVHNKLWLQRRNGeDIpVAQTKNINHRRFAAS- 106  

                   tsLtitnvtpeDggtYtCvv<-*
                     +++++vt+ D + Y+Cv    
     pf03445   107 --FRLQEVTKTDQDLYRCVT    124  

PF00041.11.fs: domain 1 of 2, from 143 to 229: score 41.9, E = 2.2e-11
                   *->PsaP.tnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg
                      P+ P   ++  +v++t+l ++ ++ +  g+gpi   ev+yR ++ +g
     pf03445   143    PPRPiAPPQLLGVGPTYLLIQLNANSiiGDGPIILKEVEYR-MT-SG 187  

                   ewkeltvpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-*
                   +w+e    +   +y l  L P+teY++rV  ++ g+G++G +    
     pf03445   188 SWTETHAVNAP-TYKLWHLDPDTEYEIRVLlTRPGEGgtGLPG    229  

PF00041.11.ls: domain 1 of 2, from 143 to 229: score 43.9, E = 5.1e-10
                   *->PsaP.tnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg
                      P+ P   ++  +v++t+l ++ ++ +  g+gpi   ev+yR ++ +g
     pf03445   143    PPRPiAPPQLLGVGPTYLLIQLNANSiiGDGPIILKEVEYR-MT-SG 187  

                   ewkeltvpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-*
                   +w+e    +   +y l  L P+teY++rV  ++ g+G++G +    
     pf03445   188 SWTETHAVNAP-TYKLWHLDPDTEYEIRVLlTRPGEGgtGLPG    229  

PF00041.11.ls: domain 2 of 2, from 344 to 435: score 52.1, E = 1.7e-12
                   *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge.
                      P +++ l+ t+  ++ + l+W+ P ++ng it Ye+ y ++ ++ ++
     pf03445   344    PVPVKSLQGTS-FENKIFLNWKEPLdPNGIITQYEISY-SSIRSFDp 388  

                   .......wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                     +  +++++++  +++t++++  L Pgt+Y++ ++A + +G Gp +   
     pf03445   389 avpvagpPQTVSNLWNSTHHVFMHLHPGTTYQFFIRASTVKGfGPAT    435  

PF00041.11.fs: domain 2 of 2, from 344 to 435: score 50.1, E = 9.3e-14
                   *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge.
                      P +++ l+ t+  ++ + l+W+ P ++ng it Ye+ y ++ ++ ++
     pf03445   344    PVPVKSLQGTS-FENKIFLNWKEPLdPNGIITQYEISY-SSIRSFDp 388  

                   .......wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                     +  +++++++  +++t++++  L Pgt+Y++ ++A + +G Gp +   
     pf03445   389 avpvagpPQTVSNLWNSTHHVFMHLHPGTTYQFFIRASTVKGfGPAT    435  

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