hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-05550794/chunk_1/iprscan-20080813-05550794.nocrc
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Query sequence: pf03445
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00060                                                  74.9    9.7e-18   3
SM00409                                                  43.7    2.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      53   141 ..     1    58 []    43.7  2.4e-08
SM00060    1/3     143   226 ..     1    69 []    30.7   0.0002
SM00060    2/3     242   328 ..     1    69 []     5.0       57
SM00060    3/3     344   432 ..     1    69 []    39.3  5.2e-07

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 53 to 141: score 43.7, E = 2.4e-08
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                       ++v+v++G+++t++C a++ +  ++  W++++++ + +  ++++ +
     pf03445    53    LGdVEVNAGQNATFQCiATgrdavhNKLWLqrrngedipvaqtknin 99   

                   .......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +++   ++++++vt+ D+     Y+C+ ++  gs+ s ++++L+V+   
     pf03445   100 hrrfaasFRLqEVTKTDQ---DLYRCVTQseRGSGVS-NFAQLIVR    141  

SM00060: domain 1 of 3, from 143 to 226: score 30.7, E = 0.0002
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg
                      P+ P  p  +++  v++t       + ++ ++ +  ++++   ++v+
     pf03445   143    PPRPIAP--PQLLGVGPT------YLLIQLNANsiigdgpiilkEVE 181  

                   Yr................ytltgLkPgaepwteYefrVrAvngndaGeg<
                   Yr ++++++++  ++ ++y+l +L P+    teYe+rV     +++G g 
     pf03445   182 YRmtsgswtethavnaptYKLWHLDPD----TEYEIRVLLTRPGEGGTG  226  

                   -*
                     
     pf03445     -    -    

SM00060: domain 2 of 3, from 242 to 328: score 5.0, E = 57
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr......
                         P+    l++ ++ ++       + + We  +++i+++++ +++ 
     pf03445   242    MRTPKT---LKIAEIQAR------RIAVDWESLgynITRCHtfnvti 279  

                   ........................ytltgLkPgaepwteYefrVrAvngn
                        ++ ++++ +  + +++ +++++ +L P+    t+ + + +  n  
     pf03445   280 cyhyfrghneskadcldmdpkapqHVVNHLPPY----TNVSLKMILTNP- 324  

                   daGeg<-*
                     G+    
     pf03445   325 -EGRK    328  

SM00060: domain 3 of 3, from 344 to 432: score 39.3, E = 5.2e-07
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P p++    l+ t   ++       + l W++P ++++ i++Y+ + 
     pf03445   344    PVPVKS---LQGT-SFEN------KIFLNWKEPldpngiITQYEisy 380  

                   ...........................ytltgLkPgaepwteYefrVrAv
                   ++ ++ ++ +++ ++++++++ ++++ +++ +L+Pg    t+Y+f +rA 
     pf03445   381 ssirsfdpavpvagppqtvsnlwnsthHVFMHLHPG----TTYQFFIRAS 426  

                   ngndaGeg<-*
                   +   +G g   
     pf03445   427 TV--KGFG    432  

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