hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-06014300/chunk_1/iprscan-20080813-06014300.nocrc
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Query sequence: pf03512
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00109                                                 132.8    3.6e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/2      46    95 ..     1    61 []    69.6    4e-16
SM00109    2/2     111   160 ..     1    61 []    63.3  3.1e-14

Alignments of top-scoring domains:
SM00109: domain 1 of 2, from 46 to 95: score 69.6, E = 4e-16
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      Hkf +r f++ptfC++C ++iwg+ kq     gl+C++C +++H +C
     pf03512    46    HKFTARFFkQPTFCSHCTDFIWGIGKQ-----GLQCQVCSFVVHRRC 87   

                   aekvpaqshksglsC<-*
                   +e+v+         C   
     pf03512    88 HEFVTF-------EC    95   

SM00109: domain 2 of 2, from 111 to 160: score 63.3, E = 3.1e-14
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      Hkf+ +++++ptfCd+C+++++g+ +q     g++Cs+C +++H +C
     pf03512   111    HKFRLHSYsSPTFCDHCGSLLYGLVHQ-----GMKCSCCEMNVHRRC 152  

                   aekvpaqshksglsC<-*
                   ++ vp+        C   
     pf03512   153 VRSVPS-------LC    160  

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