# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opf03743.fasta.nr -Q pf03743.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pf03743, 210 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842400 sequences Expectation_n fit: rho(ln(x))= 4.8439+/-0.000182; mu= 10.2018+/- 0.010 mean_var=70.2115+/-13.669, 0's: 43 Z-trim: 48 B-trim: 0 in 0/67 Lambda= 0.153063 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088924|dbj|BAD92909.1| Transducin-like enhanc ( 210) 1507 341.1 6.4e-92 gi|193785513|dbj|BAG50879.1| unnamed protein produ ( 418) 592 139.3 7.1e-31 gi|194385800|dbj|BAG65275.1| unnamed protein produ ( 430) 592 139.3 7.3e-31 gi|13879384|gb|AAH06672.1| Tle3 protein [Mus muscu ( 446) 592 139.3 7.5e-31 gi|66910607|gb|AAH97419.1| Tle3 protein [Rattus no ( 537) 592 139.4 8.6e-31 gi|119598256|gb|EAW77850.1| transducin-like enhanc ( 585) 592 139.4 9.2e-31 gi|74000935|ref|XP_544749.2| PREDICTED: similar to ( 711) 592 139.5 1.1e-30 gi|74182613|dbj|BAE34664.1| unnamed protein produc ( 712) 592 139.5 1.1e-30 gi|26327207|dbj|BAC27347.1| unnamed protein produc ( 731) 592 139.5 1.1e-30 gi|109081711|ref|XP_001086565.1| PREDICTED: simila ( 749) 592 139.5 1.1e-30 gi|194670338|ref|XP_877614.3| PREDICTED: similar t ( 760) 592 139.5 1.1e-30 gi|168270592|dbj|BAG10089.1| transducin-like enhan ( 760) 592 139.5 1.1e-30 gi|194391148|dbj|BAG60692.1| unnamed protein produ ( 762) 592 139.5 1.1e-30 gi|126277113|ref|XP_001367774.1| PREDICTED: simila ( 762) 592 139.5 1.1e-30 gi|126277122|ref|XP_001367895.1| PREDICTED: simila ( 762) 592 139.5 1.1e-30 gi|126277119|ref|XP_001367858.1| PREDICTED: simila ( 762) 592 139.5 1.1e-30 gi|145207950|ref|NP_001077397.1| transducin-like e ( 764) 592 139.5 1.1e-30 gi|29428098|sp|Q9JIT3|TLE3_RAT Transducin-like enh ( 764) 592 139.5 1.1e-30 gi|46391800|gb|AAS90945.1| transducin-like enhance ( 764) 592 139.5 1.1e-30 gi|119598254|gb|EAW77848.1| transducin-like enhanc ( 766) 592 139.5 1.1e-30 gi|34783362|gb|AAH43247.1| TLE3 protein [Homo sapi ( 767) 592 139.5 1.1e-30 gi|157384986|ref|NP_001098662.1| transducin-like e ( 769) 592 139.5 1.1e-30 gi|119598255|gb|EAW77849.1| transducin-like enhanc ( 770) 592 139.5 1.1e-30 gi|119598257|gb|EAW77851.1| transducin-like enhanc ( 771) 592 139.5 1.1e-30 gi|313236|emb|CAA51770.1| ESG protein [Mus musculu ( 771) 592 139.5 1.1e-30 gi|29429207|sp|Q08122|TLE3_MOUSE Transducin-like e ( 771) 592 139.5 1.1e-30 gi|145207972|ref|NP_033415.2| transducin-like enha ( 772) 592 139.5 1.1e-30 gi|27469815|gb|AAH41831.1| TLE3 protein [Homo sapi ( 772) 592 139.5 1.1e-30 gi|20532417|sp|Q04726|TLE3_HUMAN Transducin-like e ( 772) 592 139.5 1.1e-30 gi|126277116|ref|XP_001367813.1| PREDICTED: simila ( 774) 592 139.5 1.1e-30 gi|33991693|gb|AAH56465.1| Tle3 protein [Mus muscu ( 782) 592 139.5 1.1e-30 gi|126277125|ref|XP_001367936.1| PREDICTED: simila ( 783) 592 139.5 1.1e-30 gi|148694063|gb|EDL26010.1| transducin-like enhanc ( 577) 589 138.7 1.4e-30 gi|149041892|gb|EDL95733.1| transducin-like enhanc ( 722) 589 138.8 1.7e-30 gi|190338814|gb|AAI62533.1| Unknown (protein for M ( 762) 587 138.4 2.4e-30 gi|94732315|emb|CAK04057.1| groucho 2 [Danio rerio ( 776) 587 138.4 2.4e-30 gi|47225892|emb|CAF98372.1| unnamed protein produc ( 780) 586 138.2 2.8e-30 gi|194034369|ref|XP_001928278.1| PREDICTED: transd ( 698) 584 137.7 3.5e-30 gi|194034371|ref|XP_001928299.1| PREDICTED: transd ( 699) 584 137.7 3.6e-30 gi|76559838|dbj|BAE45317.1| transducin-like enhanc ( 763) 584 137.7 3.8e-30 gi|194206511|ref|XP_001495484.2| PREDICTED: transd ( 769) 584 137.7 3.8e-30 gi|114657878|ref|XP_001174918.1| PREDICTED: transd ( 699) 583 137.5 4.1e-30 gi|193788470|dbj|BAG53364.1| unnamed protein produ ( 699) 583 137.5 4.1e-30 gi|114657874|ref|XP_001174925.1| PREDICTED: transd ( 706) 583 137.5 4.2e-30 gi|114657876|ref|XP_001174927.1| PREDICTED: transd ( 708) 583 137.5 4.2e-30 gi|114657864|ref|XP_001174931.1| PREDICTED: transd ( 757) 583 137.5 4.4e-30 gi|114657862|ref|XP_001174941.1| PREDICTED: transd ( 760) 583 137.5 4.4e-30 gi|114657870|ref|XP_001174928.1| PREDICTED: transd ( 762) 583 137.5 4.4e-30 gi|47230688|emb|CAF99881.1| unnamed protein produc ( 620) 582 137.2 4.4e-30 gi|114657858|ref|XP_523111.2| PREDICTED: transduci ( 764) 583 137.5 4.4e-30 >>gi|62088924|dbj|BAD92909.1| Transducin-like enhancer o (210 aa) initn: 1507 init1: 1507 opt: 1507 Z-score: 1805.4 bits: 341.1 E(): 6.4e-92 Smith-Waterman score: 1507; 100.000% identity (100.000% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pf0374 SKRWHFSQALSRVGMLGECVDRGKGHSRTPVGFWSDLKQGYITGCKNQSWSVNHCLPRWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SKRWHFSQALSRVGMLGECVDRGKGHSRTPVGFWSDLKQGYITGCKNQSWSVNHCLPRWS 10 20 30 40 50 60 70 80 90 100 110 120 pf0374 HPSTWGYWVRMVSEQRGLEAGQPVGGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HPSTWGYWVRMVSEQRGLEAGQPVGGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHV 70 80 90 100 110 120 130 140 150 160 170 180 pf0374 SADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIW 130 140 150 160 170 180 190 200 210 pf0374 DISQPGSKSPISQLDCLVRIPGLLRLLQLV :::::::::::::::::::::::::::::: gi|620 DISQPGSKSPISQLDCLVRIPGLLRLLQLV 190 200 210 >>gi|193785513|dbj|BAG50879.1| unnamed protein product [ (418 aa) initn: 592 init1: 592 opt: 592 Z-score: 709.4 bits: 139.3 E(): 7.1e-31 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:93-177) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|193 RSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 70 80 90 100 110 120 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|193 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 130 140 150 160 170 180 210 pf0374 RLLQLV gi|193 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 190 200 210 220 230 240 >>gi|194385800|dbj|BAG65275.1| unnamed protein product [ (430 aa) initn: 592 init1: 592 opt: 592 Z-score: 709.3 bits: 139.3 E(): 7.3e-31 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:105-189) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|194 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 80 90 100 110 120 130 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|194 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 140 150 160 170 180 190 210 pf0374 RLLQLV gi|194 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 200 210 220 230 240 250 >>gi|13879384|gb|AAH06672.1| Tle3 protein [Mus musculus] (446 aa) initn: 592 init1: 592 opt: 592 Z-score: 709.1 bits: 139.3 E(): 7.5e-31 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:121-205) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|138 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 100 110 120 130 140 150 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|138 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 160 170 180 190 200 210 210 pf0374 RLLQLV gi|138 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 220 230 240 250 260 270 >>gi|66910607|gb|AAH97419.1| Tle3 protein [Rattus norveg (537 aa) initn: 613 init1: 588 opt: 592 Z-score: 708.0 bits: 139.4 E(): 8.6e-31 Smith-Waterman score: 592; 92.308% identity (96.703% similar) in 91 aa overlap (115-205:444-534) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|669 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 420 430 440 450 460 470 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: .. :. gi|669 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLGQLHPLM 480 490 500 510 520 530 210 pf0374 RLLQLV . gi|669 QASP >>gi|119598256|gb|EAW77850.1| transducin-like enhancer o (585 aa) initn: 617 init1: 592 opt: 592 Z-score: 707.5 bits: 139.4 E(): 9.2e-31 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:260-344) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|119 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 230 240 250 260 270 280 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|119 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 290 300 310 320 330 340 210 pf0374 RLLQLV gi|119 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 350 360 370 380 390 400 >>gi|74000935|ref|XP_544749.2| PREDICTED: similar to Tra (711 aa) initn: 617 init1: 592 opt: 592 Z-score: 706.4 bits: 139.5 E(): 1.1e-30 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:386-470) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|740 RSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 360 370 380 390 400 410 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|740 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 420 430 440 450 460 470 210 pf0374 RLLQLV gi|740 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 480 490 500 510 520 530 >>gi|74182613|dbj|BAE34664.1| unnamed protein product [M (712 aa) initn: 617 init1: 592 opt: 592 Z-score: 706.4 bits: 139.5 E(): 1.1e-30 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:387-471) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|741 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 360 370 380 390 400 410 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|741 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 420 430 440 450 460 470 210 pf0374 RLLQLV gi|741 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 480 490 500 510 520 530 >>gi|26327207|dbj|BAC27347.1| unnamed protein product [M (731 aa) initn: 617 init1: 592 opt: 592 Z-score: 706.2 bits: 139.5 E(): 1.1e-30 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:406-490) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|263 SFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 380 390 400 410 420 430 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|263 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 440 450 460 470 480 490 210 pf0374 RLLQLV gi|263 SCKLLPDGRTLIVGGEASTLTIRDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 500 510 520 530 540 550 >>gi|109081711|ref|XP_001086565.1| PREDICTED: similar to (749 aa) initn: 617 init1: 592 opt: 592 Z-score: 706.1 bits: 139.5 E(): 1.1e-30 Smith-Waterman score: 592; 98.824% identity (98.824% similar) in 85 aa overlap (115-199:424-508) 90 100 110 120 130 140 pf0374 GGSADDLGQAYGNSEGPGWMAAVTVSHLFRAYSFHVSADGQMQPVPFPHDALAGPGIPRH :::::::::::::::::::::::::::::: gi|109 RSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRH 400 410 420 430 440 450 150 160 170 180 190 200 pf0374 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLVRIPGLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|109 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 460 470 480 490 500 510 210 pf0374 RLLQLV gi|109 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 520 530 540 550 560 570 210 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 06:05:23 2008 done: Wed Aug 13 06:08:11 2008 Total Scan time: 647.480 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]