hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-06134015/chunk_1/iprscan-20080813-06134015.nocrc
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Query sequence: pf04127
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01363.12.fs FYVE zinc finger                                59.5    9.6e-16   1
PF01363.12.ls FYVE zinc finger                                51.6    2.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01363.12.fs   1/1     164   208 ..     1    46 [.    59.5  9.6e-16
PF01363.12.ls   1/1     164   273 ..     1    77 []    51.6  2.4e-12

Alignments of top-scoring domains:
PF01363.12.fs: domain 1 of 1, from 164 to 208: score 59.5, E = 9.6e-16
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvl<
                      + Wv D +v +C+ Cg++F+ + +RrHHCR CG i C++C + ++l 
     pf04127   164    VPWVNDQDVPFCPDCGNKFS-IRNRRHHCRLCGSIMCKKCMELISL  208  

                   -*
                     
     pf04127     -    -    

PF01363.12.ls: domain 1 of 1, from 164 to 273: score 51.6, E = 2.4e-12
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      + Wv D +v +C+ Cg++F+ + +RrHHCR CG i C++C + ++l 
     pf04127   164    VPWVNDQDVPFCPDCGNKFS-IRNRRHHCRLCGSIMCKKCMELISLP 209  

                   pylgiaall.k.................................ndviek
                         +  +++ ++++++++++++ +++++++ ++ ++ ++  +     
     pf04127   210 LANKLTSASkEslsthtspsqspnsvhgsrrgsissmssvssvlDEKDDD 259  

                   pvRVCdsCydrlnk<-*
                    +R C +C d l k   
     pf04127   260 RIRCCTHCKDTLLK    273  

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