hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-17253732/chunk_1/iprscan-20090416-17253732.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf04566 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02259.13.fs FAT domain 387.3 2.1e-129 1 PF02259.13.ls FAT domain 388.9 7e-114 1 PF00454.17.ls Phosphatidylinositol 3- and 4-kinase 226.1 7.1e-65 1 PF00454.17.fs Phosphatidylinositol 3- and 4-kinase 224.4 2.3e-64 1 PF02260.10.fs FATC domain 60.5 1.3e-16 1 PF02260.10.ls FATC domain 62.5 1.3e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02259.13.ls 1/1 1140 1535 .. 1 547 [] 388.9 7e-114 PF02259.13.fs 1/1 1140 1535 .. 1 547 [] 387.3 2.1e-129 PF00454.17.fs 1/1 1755 2006 .. 1 329 [] 224.4 2.3e-64 PF00454.17.ls 1/1 1755 2006 .. 1 329 [] 226.1 7.1e-65 PF02260.10.fs 1/1 2068 2100 .] 1 33 [] 60.5 1.3e-16 PF02260.10.ls 1/1 2068 2100 .] 1 33 [] 62.5 1.3e-15 Alignments of top-scoring domains: PF02259.13.ls: domain 1 of 1, from 1140 to 1535: score 388.9, E = 7e-114 *->aplaleAAWrlgqWddqdlmeeylsamklkLLLqGedqSLLtfiddt +l+++AAWr++qWd++ ++ +++++ pf04566 1140 EELHYQAAWRNMQWDHCTSVSKEVEGTS------------------- 1167 pdkeFfkAiLalhksqelsfliilqdlllalkkgeekefdealkyidiyr ++++l++al++++++ef+ +++ ++ pf04566 1168 ----------------------YHESLYNALQSLRDREFSTFYESLK--- 1192 eardlldtelsalpgkeSynraYdvlvrlQmLaELeEAsIyaLsTniiny +ar++ ++e++ + eS++++Y++l rlQ++ ELe+ i ++ pf04566 1193 YARVKEVEEMCKRSL-ESVYSLYPTLSRLQAIGELES---------IGEL 1232 kskpgelaslaelrLvmkrllktWrrRLpgvkqddvevWqdiLavRrval +s++ ++++l + + ++W+++++ +k++d++++++i+a+R v+l pf04566 1233 FSRSVTHRQL-------SEVYIKWQKHSQLLKDSDFSFQEPIMALRTVIL 1275 slieeklktqsgvtamvderspSqhaplr.dpansrlfsIkelLqkSlsd +++ ++++++ns++++Ik++L+k+l++ pf04566 1276 EIL------------------------MEkEMDNSQRECIKDILTKHLVE 1301 lnrslvlgphedaetwlkfArlcRna.eagvseIqle.ksgLWdk.rlsl l+ +++ ++++++ f+ +++n+ ++gvse+qle+++ +W+k++ sl pf04566 1302 LSILARTFKNTQLPERAIFQIKQYNSvSCGVSEWQLEeAQVFWAKkEQSL 1351 AekaLlkllgldnsl..pedplprlspsvvyaylKllwqegchrqainel A+++L++++++ + + ++p ++l++ ++++ ++++++e+c++++ +++ pf04566 1352 ALSILKQMIKKLDAScaANNPSLKLTYTECLRVCGNWLAETCLENPAVIM 1401 qnyleVkaltnlqyftselsaelftlkgkfleqlg.lkeeqlqkeenayt q+yle ka++ ++++ +e s+el+++k+k++++l++++++q+q++en++ pf04566 1402 QTYLE-KAVEVAGNYDGESSDELRNGKMKAFLSLArFSDTQYQRIENYM- 1449 aeqihlgatysimanalLlARCyLklGeWqkalrqdswnesidgilqsya ++++ pf04566 1450 --------------------------------------------KSSEFE 1455 eAteldpkwykaWhtwAlhnfEvvsileqeeqQlakiqeasdsaldaqmt ++++l+++++++ + h+ q++ pf04566 1456 NKQALLKRAKEEVGLLREHKI--------------------------QTN 1479 svtskdqqsekldesasqseseliseyavpAvegylrSlslgskeslqdt ++t+k+q+++ lde a++++ e++++++++Ave+y+ +l +g +e++++ pf04566 1480 RYTVKVQRELELDELALRALKEDRKRFLCKAVENYINCLLSG-EEHDMWV 1528 lRLLtLW<-* +RL++LW pf04566 1529 FRLCSLW 1535 PF02259.13.fs: domain 1 of 1, from 1140 to 1535: score 387.3, E = 2.1e-129 *->aplaleAAWrlgqWddqdlmeeylsamklkLLLqGedqSLLtfiddt +l+++AAWr++qWd++ ++ +++++ pf04566 1140 EELHYQAAWRNMQWDHCTSVSKEVEGTS------------------- 1167 pdkeFfkAiLalhksqelsfliilqdlllalkkgeekefdealkyidiyr ++++l++al++++++ef+ +++ ++ pf04566 1168 ----------------------YHESLYNALQSLRDREFSTFYESLK--- 1192 eardlldtelsalpgkeSynraYdvlvrlQmLaELeEAsIyaLsTniiny +ar++ ++e++ + eS++++Y++l rlQ++ ELe+ i ++ pf04566 1193 YARVKEVEEMCKRSL-ESVYSLYPTLSRLQAIGELES---------IGEL 1232 kskpgelaslaelrLvmkrllktWrrRLpgvkqddvevWqdiLavRrval +s++ ++++l + + ++W+++++ +k++d++++++i+a+R v+l pf04566 1233 FSRSVTHRQL-------SEVYIKWQKHSQLLKDSDFSFQEPIMALRTVIL 1275 slieeklktqsgvtamvderspSqhaplr.dpansrlfsIkelLqkSlsd +++ ++++++ns++++Ik++L+k+l++ pf04566 1276 EIL------------------------MEkEMDNSQRECIKDILTKHLVE 1301 lnrslvlgphedaetwlkfArlcRna.eagvseIqle.ksgLWdk.rlsl l+ +++ ++++++ f+ +++n+ ++gvse+qle+++ +W+k++ sl pf04566 1302 LSILARTFKNTQLPERAIFQIKQYNSvSCGVSEWQLEeAQVFWAKkEQSL 1351 AekaLlkllgldnsl..pedplprlspsvvyaylKllwqegchrqainel A+++L++++++ + + ++p ++l++ ++++ ++++++e+c++++ +++ pf04566 1352 ALSILKQMIKKLDAScaANNPSLKLTYTECLRVCGNWLAETCLENPAVIM 1401 qnyleVkaltnlqyftselsaelftlkgkfleqlg.lkeeqlqkeenayt q+yle ka++ ++++ +e s+el+++k+k++++l++++++q+q++en++ pf04566 1402 QTYLE-KAVEVAGNYDGESSDELRNGKMKAFLSLArFSDTQYQRIENYM- 1449 aeqihlgatysimanalLlARCyLklGeWqkalrqdswnesidgilqsya ++++ pf04566 1450 --------------------------------------------KSSEFE 1455 eAteldpkwykaWhtwAlhnfEvvsileqeeqQlakiqeasdsaldaqmt ++++l+++++++ + h+ q++ pf04566 1456 NKQALLKRAKEEVGLLREHKI--------------------------QTN 1479 svtskdqqsekldesasqseseliseyavpAvegylrSlslgskeslqdt ++t+k+q+++ lde a++++ e++++++++Ave+y+ +l +g +e++++ pf04566 1480 RYTVKVQRELELDELALRALKEDRKRFLCKAVENYINCLLSG-EEHDMWV 1528 lRLLtLW<-* +RL++LW pf04566 1529 FRLCSLW 1535 PF00454.17.fs: domain 1 of 1, from 1755 to 2006: score 224.4, E = 2.3e-64 *->gypfifKgGdDLrsrQDelvlQligVfKPkDEEPyApnNPkgtkvsq + ++++Kg dDLr QD+ + Q + pf04566 1755 ERRQLVKGRDDLR--QDAVMQQVF----------------------- 1776 GerlmnkllkgegldrrRnlqltaYlviplgpgsGlIEwvpnsttlaeil +++n+ll+ + ++r+R+l++ +Y+v+pl+ +sG++Ew ++++ e l pf04566 1777 --QMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFL 1824 rtymvkkaikdfnksrffkdk.kttk.kleknakllkehkllqmvldrkq + + +a+k + ++f ++ +++ ++k pf04566 1825 VNN-EDGAHKRYRPNDFSAFQcQKKMmEVQK------------------- 1854 ltllekvevFeeklsntpkpgllqwFvkknpdaapyeewfeRfardnfvr ++ e++ + ++++ p+++ + ++k+ d+ +wfe r ++r pf04566 1855 -KSFEEKYEVFMDVCQNFQPVFRYFCMEKFLDP---AIWFE--KRLAYTR 1898 ScAgmsvldYiLGigDRHldNiLvkkndkktGklfHIDFGlcfghvkgkr S+A s+++YiLG+gDRH NiL+ ++ + +l+HID G +f+ +gk pf04566 1899 SVATSSIVGYILGLGDRHVQNILI---NEQSAELVHIDLGVAFE--QGKI 1943 gpkpervPFrLTrWPQaklpmveamggyiasLgpsgdeglFrelceeayr +p pe+vPFrLTr ++v++m g +g eg Fr++ce++++ pf04566 1944 LPTPETVPFRLTR------DIVDGM-------GITGVEGVFRRCCEKTME 1980 alRrnanlllnlLkkkAvarGelmledglpdwrs<-* ++R ++ ll+ e +l+d+l+dw++ pf04566 1981 VMRNSQETLLTIV--------EVLLYDPLFDWTM 2006 PF00454.17.ls: domain 1 of 1, from 1755 to 2006: score 226.1, E = 7.1e-65 *->gypfifKgGdDLrsrQDelvlQligVfKPkDEEPyApnNPkgtkvsq + ++++Kg dDLr QD+ + Q + pf04566 1755 ERRQLVKGRDDLR--QDAVMQQVF----------------------- 1776 GerlmnkllkgegldrrRnlqltaYlviplgpgsGlIEwvpnsttlaeil +++n+ll+ + ++r+R+l++ +Y+v+pl+ +sG++Ew ++++ e l pf04566 1777 --QMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFL 1824 rtymvkkaikdfnksrffkdk.kttk.kleknakllkehkllqmvldrkq + + +a+k + ++f ++ +++ ++k pf04566 1825 VNN-EDGAHKRYRPNDFSAFQcQKKMmEVQK------------------- 1854 ltllekvevFeeklsntpkpgllqwFvkknpdaapyeewfeRfardnfvr ++ e++ + ++++ p+++ + ++k+ d+ +wfe r ++r pf04566 1855 -KSFEEKYEVFMDVCQNFQPVFRYFCMEKFLDP---AIWFE--KRLAYTR 1898 ScAgmsvldYiLGigDRHldNiLvkkndkktGklfHIDFGlcfghvkgkr S+A s+++YiLG+gDRH NiL+ ++ + +l+HID G +f+ +gk pf04566 1899 SVATSSIVGYILGLGDRHVQNILI---NEQSAELVHIDLGVAFE--QGKI 1943 gpkpervPFrLTrWPQaklpmveamggyiasLgpsgdeglFrelceeayr +p pe+vPFrLTr ++v++m g +g eg Fr++ce++++ pf04566 1944 LPTPETVPFRLTR------DIVDGM-------GITGVEGVFRRCCEKTME 1980 alRrnanlllnlLkkkAvarGelmledglpdwrs<-* ++R ++ ll+ e +l+d+l+dw++ pf04566 1981 VMRNSQETLLTIV--------EVLLYDPLFDWTM 2006 PF02260.10.fs: domain 1 of 1, from 2068 to 2100: score 60.5, E = 1.3e-16 *->epLsvegqvedLIqqATspenLsqmYiGWcPfl<-* ++Lsv gqv++LIqqA +p+nLs++++GW++++ pf04566 2068 TVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV 2100 PF02260.10.ls: domain 1 of 1, from 2068 to 2100: score 62.5, E = 1.3e-15 *->epLsvegqvedLIqqATspenLsqmYiGWcPfl<-* ++Lsv gqv++LIqqA +p+nLs++++GW++++ pf04566 2068 TVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV 2100 //