hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-17253732/chunk_1/iprscan-20090416-17253732.nocrc
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Query sequence: pf04566
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 391.0   6.8e-113   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00146      1/1    1757  2060 ..     1   336 []   391.0 6.8e-113

Alignments of top-scoring domains:
SM00146: domain 1 of 1, from 1757 to 2060: score 391.0, E = 6.8e-113
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp
                      + ++Kg+DDLRQDa ++Q+++++++lL++++etr+++L++++Ykv+p
     pf04566  1757    RQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVP 1803 

                   tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka
                   ++++sG++E+++ ++++ e l++ ++ ++                     
     pf04566  1804 LSQRSGVLEWCTGTVPIGEFLVNNEDGAH--------------------K 1833 

                   qy.ptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekf
                   +y+p++++a++++k++++ +++++e+++  ++ ++++++pv++ +++ekf
     pf04566  1834 RYrPNDFSAFQCQKKMMEVQKKSFEEKYEVFMDVCQNFQPVFRYFCMEKF 1883 

                   pdpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHI
                    dp  i+fe r  +trS+A  S+v+YiLGlGDRH +NI++ +++ +l+HI
     pf04566  1884 LDP-AIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHI 1932 

                   DFGfilgngpklpgfklfgRErvPFrLTpemvdvmGgGgkpsgvfglFrs
                   D+G ++++g+ lp++     E+vPFrLT+++vd+mG    ++gv+g Fr+
     pf04566  1933 DLGVAFEQGKILPTP-----ETVPFRLTRDIVDGMG----ITGVEGVFRR 1973 

                   lCerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrldv
                   +Ce++++++R ++++l++++e++l+d+l ++w++++ +  yl++r + + 
     pf04566  1974 CCEKTMEVMRNSQETLLTIVEVLLYDPL-FDWTMNPLKALYLQQRPEDE- 2021 

                   lsdeeaaeyfkktektkliessleslttrlndlfhllaql<-*
                    ++ + +  ++++e++  +++ ++s+++ +  ++++l++    
     pf04566  2022 -TELHPTLNADDQECKRNLSDIDQSFNKVAERVLMRLQEK    2060 

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