hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-06200115/chunk_1/iprscan-20080813-06200115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf04944 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00955.11.ls HCO3- transporter family 1232.1 0 1 PF00955.11.fs HCO3- transporter family 1230.3 0 1 PF07565.4.ls Band 3 cytoplasmic domain 529.6 3.2e-156 1 PF07565.4.fs Band 3 cytoplasmic domain 527.8 1.1e-155 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07565.4.fs 1/1 100 351 .. 1 286 [] 527.8 1.1e-155 PF07565.4.ls 1/1 100 351 .. 1 286 [] 529.6 3.2e-156 PF00955.11.fs 1/1 398 919 .. 1 519 [] 1230.3 0 PF00955.11.ls 1/1 398 919 .. 1 519 [] 1232.1 0 Alignments of top-scoring domains: PF07565.4.fs: domain 1 of 1, from 100 to 351: score 527.8, E = 1.1e-155 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva +ve+ggerW+KPHVAtLS+hSL+ELR+c++kG ++LD +a+SLp+ + pf04944 100 KVEQGGERWSKPHVATLSLHSLFELRTCMEKGSIMLDREASSLPQLV 146 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp + +vd +i+ g l++e +++V+ +LL+KH+Hq++k++ pf04944 147 EMIVDHQIETGLLKPELKDKVTYTLLRKHRHQTKKSN------------- 183 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt +rs+a+iGk++s+ as+++ p+ +++p +++r+l++ + pf04944 184 -LRSLADIGKTVSS-----ASRMFTNPD-------NGSPAMTHRNLTSSS 220 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi l++ ++ +++k +l++k++kK+P+daEAsnVLVGevDFL+ P+ pf04944 221 LNDISD--------KPEKDQLKNKFMKKLPRDAEASNVLVGEVDFLDTPF 262 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRLq+Av+L++++EVPVP+RFLF+LLGP+gk+++YHEiGRaiATLMs pf04944 263 IAFVRLQQAVMLGALTEVPVPTRFLFILLGPKGKAKSYHEIGRAIATLMS 312 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* DevFhd+AY+Ak+R DL+agIdeFLD++iVLPPgE+dp pf04944 313 DEVFHDIAYKAKDRHDLIAGIDEFLDEVIVLPPGEWDPA 351 PF07565.4.ls: domain 1 of 1, from 100 to 351: score 529.6, E = 3.2e-156 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva +ve+ggerW+KPHVAtLS+hSL+ELR+c++kG ++LD +a+SLp+ + pf04944 100 KVEQGGERWSKPHVATLSLHSLFELRTCMEKGSIMLDREASSLPQLV 146 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp + +vd +i+ g l++e +++V+ +LL+KH+Hq++k++ pf04944 147 EMIVDHQIETGLLKPELKDKVTYTLLRKHRHQTKKSN------------- 183 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt +rs+a+iGk++s+ as+++ p+ +++p +++r+l++ + pf04944 184 -LRSLADIGKTVSS-----ASRMFTNPD-------NGSPAMTHRNLTSSS 220 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi l++ ++ +++k +l++k++kK+P+daEAsnVLVGevDFL+ P+ pf04944 221 LNDISD--------KPEKDQLKNKFMKKLPRDAEASNVLVGEVDFLDTPF 262 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRLq+Av+L++++EVPVP+RFLF+LLGP+gk+++YHEiGRaiATLMs pf04944 263 IAFVRLQQAVMLGALTEVPVPTRFLFILLGPKGKAKSYHEIGRAIATLMS 312 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* DevFhd+AY+Ak+R DL+agIdeFLD++iVLPPgE+dp pf04944 313 DEVFHDIAYKAKDRHDLIAGIDEFLDEVIVLPPGEWDPA 351 PF00955.11.fs: domain 1 of 1, from 398 to 919: score 1230.3, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L+RTGR++GGLI+DiKR++P++ SDf+DALn+Q L+Ai+FiY+A++ pf04944 398 ELQRTGRFCGGLIKDIKRKAPFFASDFYDALNIQALSAILFIYLATV 444 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP ++AITFGGLLG++T++++Gv+Es+l+tAv G++F+L+agQPL+Il+sTGP pf04944 445 TNAITFGGLLGDATDNMQGVLESFLGTAVSGAIFCLFAGQPLTILSSTGP 494 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +LVFE++lF+F+kdn +dYL+fR+WIGlW+a+++L+lVAt++SfLV y+T pf04944 495 VLVFERLLFNFSKDNNFDYLEFRLWIGLWSAFLCLILVATDASFLVQYFT 544 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+F++LIS+IFIY++fkK+ik+++++P+ns++k+ + t+ sC cvp pf04944 545 RFTEEGFSSLISFIFIYDAFKKMIKLADYYPINSNFKVGYNTLFSCTCVP 594 Petvnseslaeskkltktt...........teidwslltksecekyggsl P+++n + ++++ + + ++ ++++ ++t+ dw++l+k+ec kygg+l pf04944 595 PDPANISISNDTTLAPEYLptmsstdmyhnTTFDWAFLSKKECSKYGGNL 644 dgtscgthppqPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIg +g++c ++P+++L+S+iL++GT++ +++LKkFK+S +FP+++R++I+ pf04944 645 VGNNC---NFVPDITLMSFILFLGTYTSSMALKKFKTSPYFPTTARKLIS 691 DFgVpIaIliMvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkk DF+++++Ili++++D+l+g v+T+KL VPs++kPT+p+ RGWf++P+ pf04944 692 DFAIILSILIFCVIDALVG-VDTPKLIVPSEFKPTSPN-RGWFVPPF--- 736 ggnPwWmmfaAaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDL g+nPwW+ +aAaiPALLvtILIFM+qQITa+IVn+KE+kLkKG+G+HLDL pf04944 737 GENPWWVCLAAAIPALLVTILIFMDQQITAVIVNRKEHKLKKGAGYHLDL 786 LlvavlggvCslfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgV ++va+l+++Csl+ LPW+vAATV+Si+H++sL++e+++sAPGe+P++lgV pf04944 787 FWVAILMVICSLMALPWYVAATVISIAHIDSLKMETETSAPGEQPKFLGV 836 rEQRVTGllVflLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlf rEQRVTG+lVf+L+GlSV+mapiLkfIPMpVL+GvFLYMGVaSL+G+Q++ pf04944 837 REQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFM 886 dRllLllMPaKyqPDviYvRhVptwRvHLFTli<-* dRl+LllMP K+qPD+iY+RhVp++RvHLFT++ pf04944 887 DRLKLLLMPLKHQPDFIYLRHVPLRRVHLFTFL 919 PF00955.11.ls: domain 1 of 1, from 398 to 919: score 1232.1, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L+RTGR++GGLI+DiKR++P++ SDf+DALn+Q L+Ai+FiY+A++ pf04944 398 ELQRTGRFCGGLIKDIKRKAPFFASDFYDALNIQALSAILFIYLATV 444 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP ++AITFGGLLG++T++++Gv+Es+l+tAv G++F+L+agQPL+Il+sTGP pf04944 445 TNAITFGGLLGDATDNMQGVLESFLGTAVSGAIFCLFAGQPLTILSSTGP 494 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +LVFE++lF+F+kdn +dYL+fR+WIGlW+a+++L+lVAt++SfLV y+T pf04944 495 VLVFERLLFNFSKDNNFDYLEFRLWIGLWSAFLCLILVATDASFLVQYFT 544 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+F++LIS+IFIY++fkK+ik+++++P+ns++k+ + t+ sC cvp pf04944 545 RFTEEGFSSLISFIFIYDAFKKMIKLADYYPINSNFKVGYNTLFSCTCVP 594 Petvnseslaeskkltktt...........teidwslltksecekyggsl P+++n + ++++ + + ++ ++++ ++t+ dw++l+k+ec kygg+l pf04944 595 PDPANISISNDTTLAPEYLptmsstdmyhnTTFDWAFLSKKECSKYGGNL 644 dgtscgthppqPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIg +g++c ++P+++L+S+iL++GT++ +++LKkFK+S +FP+++R++I+ pf04944 645 VGNNC---NFVPDITLMSFILFLGTYTSSMALKKFKTSPYFPTTARKLIS 691 DFgVpIaIliMvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkk DF+++++Ili++++D+l+g v+T+KL VPs++kPT+p+ RGWf++P+ pf04944 692 DFAIILSILIFCVIDALVG-VDTPKLIVPSEFKPTSPN-RGWFVPPF--- 736 ggnPwWmmfaAaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDL g+nPwW+ +aAaiPALLvtILIFM+qQITa+IVn+KE+kLkKG+G+HLDL pf04944 737 GENPWWVCLAAAIPALLVTILIFMDQQITAVIVNRKEHKLKKGAGYHLDL 786 LlvavlggvCslfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgV ++va+l+++Csl+ LPW+vAATV+Si+H++sL++e+++sAPGe+P++lgV pf04944 787 FWVAILMVICSLMALPWYVAATVISIAHIDSLKMETETSAPGEQPKFLGV 836 rEQRVTGllVflLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlf rEQRVTG+lVf+L+GlSV+mapiLkfIPMpVL+GvFLYMGVaSL+G+Q++ pf04944 837 REQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFM 886 dRllLllMPaKyqPDviYvRhVptwRvHLFTli<-* dRl+LllMP K+qPD+iY+RhVp++RvHLFT++ pf04944 887 DRLKLLLMPLKHQPDFIYLRHVPLRRVHLFTFL 919 //