hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-06200115/chunk_1/iprscan-20080813-06200115.nocrc
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Query sequence: pf04944
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00834 ae: anion exchange protein                    2305.4          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00834   1/1      72  1011 ..     1   987 []  2305.4        0

Alignments of top-scoring domains:
TIGR00834: domain 1 of 1, from 72 to 1011: score 2305.4, E = 0
                   *->fvelneLlldsrnQEpeWrETARWikfEEdveeggerWGkPHVatLs
                      f+el+eLl++ ++QE+eW+ETARWikfEE+ve+ggerW+kPHVatLs
     pf04944    72    FTELDELLAV-DGQEMEWKETARWIKFEEKVEQGGERWSKPHVATLS 117  

                   fhSLlELRrciakGavLLDLaatsLpgvankvvDqliysgqirpedRdev
                   +hSL+ELR+c++kG+++LD++a+sLp++++++vD++i++g+++pe++d+v
     pf04944   118 LHSLFELRTCMEKGSIMLDREASSLPQLVEMIVDHQIETGLLKPELKDKV 167  

                   lraLLlKHsHpseakklgaGGekGGflsravsqssiGktlshhhdaseie
                   +++LL+KH+H+  +kk           s+++s+++iGkt+s+   as+++
     pf04944   168 TYTLLRKHRHQ--TKK-----------SNLRSLADIGKTVSS---ASRMF 201  

                   pkpenPvisgagaPllphdrltemqllsvpkdissrPeksklklkllkKl
                   ++p+n      g+P+++h++lt+++l+    dis++Pek++lk+k++kKl
     pf04944   202 TNPDN------GSPAMTHRNLTSSSLN----DISDKPEKDQLKNKFMKKL 241  

                   PedaEAtlVLVGevdFLekPalAFVRLkeAveLeavlEVPVPvRFlFvLL
                   P+daEA++VLVGevdFL++P++AFVRL++Av+L+a++EVPVP+RFlF+LL
     pf04944   242 PRDAEASNVLVGEVDFLDTPFIAFVRLQQAVMLGALTEVPVPTRFLFILL 291  

                   GPsgpgvdYhEiGRAiATLMsDrvFhdaAYlAddRddLLagIdeFLDcsi
                   GP+g++++YhEiGRAiATLMsD+vFhd+AY+A+dR+dL+agIdeFLD++i
     pf04944   292 GPKGKAKSYHEIGRAIATLMSDEVFHDIAYKAKDRHDLIAGIDEFLDEVI 341  

                   VLPPtEvdseirLepliplQrellRkRyeqpstvrgpenvtvgggleeak
                   VLPP+E+d++ir+ep+++l+++++Rk     ++++g+env+++g++++  
     pf04944   342 VLPPGEWDPAIRIEPPKSLPSSDKRK-----NMYSGGENVQMNGDTPH-- 384  

                   ekaLedggsegphgDDdpLqRTGrlFGGLIrDIkRRYPhYlSDftDALnp
                       ++g+++g+hgD+++LqRTGr++GGLI+DIkR++P+++SDf+DALn+
     pf04944   385 ----DGGHGGGGHGDCEELQRTGRFCGGLIKDIKRKAPFFASDFYDALNI 430  

                   QcLAAViFIYFAALSPAITFGGLLGEKTenmmGVsElllSTAVqGviFaL
                   Q+L+A++FIY+A++++AITFGGLLG++T+nm+GV+E++l+TAV+G+iF+L
     pf04944   431 QALSAILFIYLATVTNAITFGGLLGDATDNMQGVLESFLGTAVSGAIFCL 480  

                   laAQPLLVvGFSGPLLVFEeafFsFCksngLEYlvGRvWiGlWlvllvll
                   +a+QPL++++++GP+LVFE+++F+F+k+n+++Yl++R+WiGlW+++l+l+
     pf04944   481 FAGQPLTILSSTGPVLVFERLLFNFSKDNNFDYLEFRLWIGLWSAFLCLI 530  

                   lVAtEGSfLVryiSRFTQEIFSfLISLIFIYETFsKLiKIfqehPiisyL
                   lVAt++SfLV+y++RFT+E+FS+LIS+IFIY++F+K+iK+++++Pi+s++
     pf04944   531 LVATDASFLVQYFTRFTEEGFSSLISFIFIYDAFKKMIKLADYYPINSNF 580  

                   qqfYetlfsCscvppkpskpsvsndttlArevlkstsltdayndttiDyt
                   +++Y+tlfsC+cvpp+p+++s+sndttlA+e+l+++s+td+y++tt+D++
     pf04944   581 KVGYNTLFSCTCVPPDPANISISNDTTLAPEYLPTMSSTDMYHNTTFDWA 630  

                   allekdcskiggslggnkcralPNtALLSLvLmlGTFflAmfLRKFKNSr
                   +l++k+csk+gg+l+gn+c+++P+++L+S++L+lGT++++m+L+KFK+S+
     pf04944   631 FLSKKECSKYGGNLVGNNCNFVPDITLMSFILFLGTYTSSMALKKFKTSP 680  

                   yfPGkvRRlIGDFGVpISIliMvlVDifIeDtyTQKLsVPsglkVTnpna
                   yfP+++R+lI+DF++++SIli++++D++++ ++T+KL+VPs++k+T+pn 
     pf04944   681 YFPTTARKLISDFAIILSILIFCVIDALVG-VDTPKLIVPSEFKPTSPN- 728  

                   RGWFIpPLGentpFPwWmmvAaalPALLVfILIFlEtQITTLIVSkkERK
                   RGWF+pP+Gen   PwW+++Aaa+PALLV+ILIF+++QIT++IV++kE+K
     pf04944   729 RGWFVPPFGEN---PWWVCLAAAIPALLVTILIFMDQQITAVIVNRKEHK 775  

                   LvKGSGFHLDLLlvvamggiaaLfGLPWLsAATVrSvTHaNALTVmskas
                   L+KG+G+HLDL++v+++++i++L++LPW++AATV+S++H+++L++++++s
     pf04944   776 LKKGAGYHLDLFWVAILMVICSLMALPWYVAATVISIAHIDSLKMETETS 825  

                   aPGekaqIqeVrEQRvtGlLVavLvGLSiLmepILkrIPLaVLFGIFLYM
                   aPGe++++++VrEQRvtG+LV++L+GLS++m+pILk+IP++VL+G+FLYM
     pf04944   826 APGEQPKFLGVREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYM 875  

                   GVTSLsGIQLfDRllLLlmPpKYhPdvpYvrrVktwRmHLFTliQilCLA
                   GV+SL+G+Q++DRl+LLlmP+K++Pd++Y+r+V+++R+HLFT++Q+lCLA
     pf04944   876 GVASLNGVQFMDRLKLLLMPLKHQPDFIYLRHVPLRRVHLFTFLQVLCLA 925  

                   LLWvVKStkaASLafPfvLiLtVPLRrlllprlFterELkcLDDviPekd
                   LLW++KSt +A+++fP++++++V++R++++ +lF++++L++LDDviPekd
     pf04944   926 LLWILKST-VAAIIFPVMILALVAVRKGMD-YLFSQHDLSFLDDVIPEKD 973  

                   kkKkeDAkvkfdEekveldsdGeDeyntyaeKveaEvpmP<-*
                   kkKkeD+k+k+++ k++ldsd++D++++y+eKv++ +++P   
     pf04944   974 KKKKEDEKKKKKK-KGSLDSDNDDSDCPYSEKVPS-IKIP    1011 

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