hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-18503888/chunk_1/iprscan-20090630-18503888.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf05178s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06010.2.ls Domain of Unknown Function (DUF906) 631.1 8.7e-187 1 PF06010.2.fs Domain of Unknown Function (DUF906) 629.3 3e-186 1 PF02135.6.ls TAZ zinc finger 311.6 1.3e-90 2 PF02135.6.fs TAZ zinc finger 308.0 1.6e-89 2 PF09030.1.ls Creb binding 272.4 8.5e-79 1 PF09030.1.fs Creb binding 270.4 3.3e-78 1 PF02172.6.ls KIX domain 184.4 2.5e-52 1 PF02172.6.fs KIX domain 182.4 1e-51 1 PF00439.15.ls Bromodomain 151.6 1.9e-42 1 PF00439.15.fs Bromodomain 149.6 7.7e-42 1 PF06001.3.fs Domain of Unknown Function (DUF902) 109.9 6.3e-32 1 PF06001.3.ls Domain of Unknown Function (DUF902) 111.9 1.7e-30 1 PF00569.8.fs Zinc finger, ZZ type 73.2 1.5e-19 1 PF00569.8.ls Zinc finger, ZZ type 75.1 2e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02135.6.ls 1/2 346 430 .. 1 97 [] 167.8 2.5e-47 PF02135.6.fs 1/2 346 430 .. 1 97 [] 166.0 9.2e-47 PF02172.6.fs 1/1 580 660 .. 1 81 [] 182.4 1e-51 PF02172.6.ls 1/1 580 660 .. 1 81 [] 184.4 2.5e-52 PF00439.15.fs 1/1 1068 1158 .. 1 92 [] 149.6 7.7e-42 PF00439.15.ls 1/1 1068 1158 .. 1 92 [] 151.6 1.9e-42 PF06001.3.fs 1/1 1159 1219 .. 1 61 [] 109.9 6.3e-32 PF06001.3.ls 1/1 1159 1219 .. 1 61 [] 111.9 1.7e-30 PF06010.2.fs 1/1 1294 1531 .. 1 270 [] 629.3 3e-186 PF06010.2.ls 1/1 1294 1531 .. 1 270 [] 631.1 8.7e-187 PF00569.8.fs 1/1 1678 1719 .. 1 46 [] 73.2 1.5e-19 PF00569.8.ls 1/1 1678 1719 .. 1 46 [] 75.1 2e-19 PF02135.6.ls 2/2 1741 1820 .. 1 97 [] 143.8 4.2e-40 PF02135.6.fs 2/2 1741 1820 .. 1 97 [] 142.0 1.5e-39 PF09030.1.ls 1/1 2004 2120 .. 1 119 [] 272.4 8.5e-79 PF09030.1.fs 1/1 2004 2120 .. 1 119 [] 270.4 3.3e-78 Alignments of top-scoring domains: PF02135.6.ls: domain 1 of 2, from 346 to 430: score 167.8, E = 2.5e-47 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng+++ C+lp pf05178s1 346 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRQ---------CNLP 381 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +Cr+mK+vl+Hm++C+ +k+C+++hC+ss+q+i+ H+KnC++++CpVC+P pf05178s1 382 HCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIIS-HWKNCTRHDCPVCLP 430 <-* pf05178s1 - - PF02135.6.fs: domain 1 of 2, from 346 to 430: score 166.0, E = 9.2e-47 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng+++ C+lp pf05178s1 346 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRQ---------CNLP 381 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +Cr+mK+vl+Hm++C+ +k+C+++hC+ss+q+i+ H+KnC++++CpVC+P pf05178s1 382 HCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIIS-HWKNCTRHDCPVCLP 430 <-* pf05178s1 - - PF02172.6.fs: domain 1 of 1, from 580 to 660: score 182.4, E = 1e-51 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k+w+e+it+dLRnHlV+KLv+aifP+pd++a++D+Rm++L+ayA pf05178s1 580 GIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 626 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* rkvE++m+Esan+r EYYhLlaekiykiqKeL+e pf05178s1 627 RKVEGDMYESANNRAEYYHLLAEKIYKIQKELEE 660 PF02172.6.ls: domain 1 of 1, from 580 to 660: score 184.4, E = 2.5e-52 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k+w+e+it+dLRnHlV+KLv+aifP+pd++a++D+Rm++L+ayA pf05178s1 580 GIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 626 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* rkvE++m+Esan+r EYYhLlaekiykiqKeL+e pf05178s1 627 RKVEGDMYESANNRAEYYHLLAEKIYKIQKELEE 660 PF00439.15.fs: domain 1 of 1, from 1068 to 1158: score 149.6, E = 7.7e-42 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k PMDL+ pf05178s1 1068 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLS 1114 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf05178s1 1115 TIKRKLDTGQY-QEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSK 1158 PF00439.15.ls: domain 1 of 1, from 1068 to 1158: score 151.6, E = 1.9e-42 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k PMDL+ pf05178s1 1068 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLS 1114 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf05178s1 1115 TIKRKLDTGQY-QEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSK 1158 PF06001.3.fs: domain 1 of 1, from 1159 to 1219: score 109.9, E = 6.3e-32 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++kL+F+P++++CyGkqlC+i++++++ pf05178s1 1159 LSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQLCTIPRDATY 1205 lhYsevenendkav<-* ++Y++++++++k++ pf05178s1 1206 YSYQNRYHFCEKCF 1219 PF06001.3.ls: domain 1 of 1, from 1159 to 1219: score 111.9, E = 1.7e-30 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++kL+F+P++++CyGkqlC+i++++++ pf05178s1 1159 LSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQLCTIPRDATY 1205 lhYsevenendkav<-* ++Y++++++++k++ pf05178s1 1206 YSYQNRYHFCEKCF 1219 PF06010.2.fs: domain 1 of 1, from 1294 to 1531: score 629.3, E = 3e-186 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA + rkenkf+ Ak+LP T+L+tfLE+Rvn fL+++ pf05178s1 1294 ARTRKENKFS------AKRLPSTRLGTFLENRVNDFLRRQ------- 1327 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pe +e vt+RVv +DKt+eVkp+mk rFv+s+++ e+FPY pf05178s1 1328 ------NHPESGE--VTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPY 1369 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVD CfFGmhVQEYGS+CP+PN+RrVYI+YLDSVhfFr pf05178s1 1370 RTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFR 1419 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P ++LRTaVYHEiLiGYLeY+KklGYtt+hIWACPPseGDDYIf pf05178s1 1420 P-------KCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIF 1462 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKAv er+V++ Ykdifkqa+ed+ pf05178s1 1463 HCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHD----YKDIFKQATEDR 1508 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf05178s1 1509 LTSAKELPYFEGDFWPNVLEESI 1531 PF06010.2.ls: domain 1 of 1, from 1294 to 1531: score 631.1, E = 8.7e-187 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA + rkenkf+ Ak+LP T+L+tfLE+Rvn fL+++ pf05178s1 1294 ARTRKENKFS------AKRLPSTRLGTFLENRVNDFLRRQ------- 1327 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pe +e vt+RVv +DKt+eVkp+mk rFv+s+++ e+FPY pf05178s1 1328 ------NHPESGE--VTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPY 1369 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVD CfFGmhVQEYGS+CP+PN+RrVYI+YLDSVhfFr pf05178s1 1370 RTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFR 1419 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P ++LRTaVYHEiLiGYLeY+KklGYtt+hIWACPPseGDDYIf pf05178s1 1420 P-------KCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIF 1462 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKAv er+V++ Ykdifkqa+ed+ pf05178s1 1463 HCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHD----YKDIFKQATEDR 1508 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf05178s1 1509 LTSAKELPYFEGDFWPNVLEESI 1531 PF00569.8.fs: domain 1 of 1, from 1678 to 1719: score 73.2, E = 1.5e-19 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC+ C++t k ++Hkm pf05178s1 1678 DRFVYTCNECKH--HVETRWHCTVCEDYDLCITCYNT--KNHDHKM 1719 -* pf05178s1 - - PF00569.8.ls: domain 1 of 1, from 1678 to 1719: score 75.1, E = 2e-19 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC+ C++t k ++Hkm pf05178s1 1678 DRFVYTCNECKH--HVETRWHCTVCEDYDLCITCYNT--KNHDHKM 1719 -* pf05178s1 - - PF02135.6.ls: domain 2 of 2, from 1741 to 1820: score 143.8, E = 4.2e-40 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++ r+l++q+++++LvHA++Cr ++ C+lp pf05178s1 1741 PGDSRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1770 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf05178s1 1771 SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFC 1820 <-* pf05178s1 - - PF02135.6.fs: domain 2 of 2, from 1741 to 1820: score 142.0, E = 1.5e-39 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++ r+l++q+++++LvHA++Cr ++ C+lp pf05178s1 1741 PGDSRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1770 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf05178s1 1771 SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFC 1820 <-* pf05178s1 - - PF09030.1.ls: domain 1 of 1, from 2004 to 2120: score 272.4, E = 8.5e-79 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ qq+++w+qg+LPq+qqlq+gmPrp+m+++ aq++++Lnm+P+p+++Q pf05178s1 2004 QQQPPWSQGGLPQPQQLQSGMPRPAMMSV-AQHGQPLNMAPQPGLGQ 2049 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF ++isPLk+g+ v+++ALQ+LLRTL+SPSSP+QQQQVL+IL++NPqL+AAF pf05178s1 2050 VGISPLKPGT-VSQQALQNLLRTLRSPSSPLQQQQVLSILHANPQLLAAF 2098 IKQRTAKYvAsnPQPiPGqPgm<-* IKQR+AKY++snPQPiPGqPgm pf05178s1 2099 IKQRAAKYANSNPQPIPGQPGM 2120 PF09030.1.fs: domain 1 of 1, from 2004 to 2120: score 270.4, E = 3.3e-78 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ qq+++w+qg+LPq+qqlq+gmPrp+m+++ aq++++Lnm+P+p+++Q pf05178s1 2004 QQQPPWSQGGLPQPQQLQSGMPRPAMMSV-AQHGQPLNMAPQPGLGQ 2049 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF ++isPLk+g+ v+++ALQ+LLRTL+SPSSP+QQQQVL+IL++NPqL+AAF pf05178s1 2050 VGISPLKPGT-VSQQALQNLLRTLRSPSSPLQQQQVLSILHANPQLLAAF 2098 IKQRTAKYvAsnPQPiPGqPgm<-* IKQR+AKY++snPQPiPGqPgm pf05178s1 2099 IKQRAAKYANSNPQPIPGQPGM 2120 //