hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-18503888/chunk_1/iprscan-20090630-18503888.nocrc
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Query sequence: pf05178s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00551                                                 238.7    4.8e-67   2
SM00297                                                 155.6    5.1e-42   1
SM00291                                                  66.4    3.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00551    1/2     346   431 ..     1   102 []   123.2    3e-32
SM00297    1/1    1062  1172 ..     1   118 []   155.6  5.1e-42
SM00291    1/1    1678  1719 ..     1    46 []    66.4  3.5e-15
SM00551    2/2    1743  1821 ..     1   102 []   115.6  5.7e-30

Alignments of top-scoring domains:
SM00551: domain 1 of 2, from 346 to 431: score 123.2, E = 3e-32
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      p+++k iq+qL lLlHA++  C++re  n e           +C++p
   pf05178s1   346    PEKRKLIQQQLVLLLHAHK--CQRREQANGEV---------RQCNLP 381  

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C++mK +l Hm+ C  +k C +++Cas++q+++    H+k+C++ + Cp
   pf05178s1   382 HCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIIS----HWKNCTRHD-CP 426  

                   Vckcv<-*
                   Vc+++   
   pf05178s1   427 VCLPL    431  

SM00297: domain 1 of 1, from 1062 to 1172: score 155.6, E = 5.1e-42
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + k+ +  q+l+ +l ++ +++        p + pF++pvd+++Lg+
   pf05178s1  1062    IFKpEELRQALMPTLEALYRQD--------PESLPFRQPVDPQLLGI 1100 

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY+di+k PMDL+tIk+kl++g+Y+ + + v+D++Lmf+NA+ YN++ s
   pf05178s1  1101 PDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTS 1150 

                   evykdAkkLeklfeeklkelpp<-*
                    vyk+  kL ++fe++++ +++   
   pf05178s1  1151 RVYKYCSKLSEVFEQEIDPVMQ    1172 

SM00291: domain 1 of 1, from 1678 to 1719: score 66.4, E = 3.5e-15
                   *->vhhsvsCdgCgkepivgvRYkClvCpDYDLCesCfakGghhgeHam<
                      ++++++C+ C++  +v++R++C+vC+DYDLC++C+++  + ++H+m 
   pf05178s1  1678    DRFVYTCNECKH--HVETRWHCTVCEDYDLCITCYNT--KNHDHKM  1719 

                   -*
                     
   pf05178s1     -    -    

SM00551: domain 2 of 2, from 1743 to 1821: score 115.6, E = 5.7e-30
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      ++r+++iqr++  L+HA++  Cr                  a+C++p
   pf05178s1  1743    DSRRLSIQRCIQSLVHACQ--CRN-----------------ANCSLP 1770 

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C kmK++++H+++CK     ++ggC+ cKql++L+++H+khC++ + Cp
   pf05178s1  1771 SCQKMKRVVQHTKGCKRK---TNGGCPICKQLIALCCYHAKHCQENK-CP 1816 

                   Vckcv<-*
                   V++c+   
   pf05178s1  1817 VPFCL    1821 

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