hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-06590527/chunk_1/iprscan-20080813-06590527.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf06711 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00617.10.ls RasGEF domain 186.6 5.4e-53 1 PF00617.10.fs RasGEF domain 184.8 1.9e-52 1 PF00618.10.fs Guanine nucleotide exchange factor for R 70.0 8.2e-20 1 PF00618.10.ls Guanine nucleotide exchange factor for R 71.8 2e-18 1 PF00027.19.fs Cyclic nucleotide-binding domain 55.2 2.7e-15 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 48.2 4.1e-12 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 50.1 7.1e-12 1 PF00027.19.ls Cyclic nucleotide-binding domain 46.5 8.1e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00027.19.ls 1/1 10 94 .. 1 98 [] 46.5 8.1e-11 PF00027.19.fs 1/1 16 94 .. 10 98 .] 55.2 2.7e-15 PF00618.10.fs 1/1 131 237 .. 1 109 [] 70.0 8.2e-20 PF00618.10.ls 1/1 131 237 .. 1 109 [] 71.8 2e-18 PF00788.13.fs 1/1 300 379 .. 1 97 [] 48.2 4.1e-12 PF00788.13.ls 1/1 300 379 .. 1 97 [] 50.1 7.1e-12 PF00617.10.fs 1/1 401 585 .. 1 227 [] 184.8 1.9e-52 PF00617.10.ls 1/1 401 585 .. 1 227 [] 186.6 5.4e-53 Alignments of top-scoring domains: PF00027.19.ls: domain 1 of 1, from 10 to 94: score 46.5, E = 8.1e-11 *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp ++ ++ +f +G++++s+Yi+l+G+v v+ +++ +++l++ pf06711 10 FIFLC---LVFNQGEEGTSWYIILKGSVNVVIyGKGV----VCTLHE 49 GdffGelallggendspSrhaprsatvvA.ltdsellvipredflellee Gd fG lal+++ pr+a++v ++++++ l++++edf+++l++ pf06711 50 GDDFGKLALVNDA--------PRAASIVLrEDNCHFLRVDKEDFNRILRD 91 dpe<-* + pf06711 92 VEA 94 PF00027.19.fs: domain 1 of 1, from 16 to 94: score 55.2, E = 2.7e-15 *->ifreGdpadslYivlsGkvkvyk.dedgreqilgilgpGdffGelal +f +G++++s+Yi+l+G+v v+ +++ +++l++Gd fG lal pf06711 16 VFNQGEEGTSWYIILKGSVNVVIyGKGV----VCTLHEGDDFGKLAL 58 lggendspSrhaprsatvvA.ltdsellvipredflelleedpe<-* +++ pr+a++v ++++++ l++++edf+++l++ + pf06711 59 VNDA--------PRAASIVLrEDNCHFLRVDKEDFNRILRDVEA 94 PF00618.10.fs: domain 1 of 1, from 131 to 237: score 70.0, E = 8.2e-20 *->qvkagtlekLvehLt.......shskl.DssFvstFLlTYRsFttpa +v++gt+ek++eh +++ + + + ++Ds +++F++++ +F++ + pf06711 131 TVMSGTPEKILEHFLetirleaTLNEAtDS-VLNDFIMMHCVFMPNT 176 eLlekLieRywseippp.nl.qssknsweekkkllkpiqlrvlnvlrhWv +L+ +L+++y + +p+++++q+++++ + ++rv++++ +W pf06711 177 QLCPALVAHY--HAQPSqGTeQEKMDYA-------LNNKRRVIRLVLQWA 217 enyfeDFadeddpellsrLleF<-* y + + ++d++ +++L+eF pf06711 218 AMYGDLL--QEDDVSMAFLEEF 237 PF00618.10.ls: domain 1 of 1, from 131 to 237: score 71.8, E = 2e-18 *->qvkagtlekLvehLt.......shskl.DssFvstFLlTYRsFttpa +v++gt+ek++eh +++ + + + ++Ds +++F++++ +F++ + pf06711 131 TVMSGTPEKILEHFLetirleaTLNEAtDS-VLNDFIMMHCVFMPNT 176 eLlekLieRywseippp.nl.qssknsweekkkllkpiqlrvlnvlrhWv +L+ +L+++y + +p+++++q+++++ + ++rv++++ +W pf06711 177 QLCPALVAHY--HAQPSqGTeQEKMDYA-------LNNKRRVIRLVLQWA 217 enyfeDFadeddpellsrLleF<-* y + + ++d++ +++L+eF pf06711 218 AMYGDLL--QEDDVSMAFLEEF 237 PF00788.13.fs: domain 1 of 1, from 300 to 379: score 48.2, E = 4.1e-12 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe d+ +Vy+ d+t y+ti+v+ t+++eVi a+++K+g + pf06711 300 DEVLFKVYCMDHT---YTTIRVPVATSVKEVISAVADKLGS-----G 338 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred + +++ + +gge vL +++ + l+ ++r++ + re+ pf06711 339 EGLIIV---KMSSGGEKV-VLKPNDVSVFTTLTI-----NGRLFACPREQ 379 <-* pf06711 - - PF00788.13.ls: domain 1 of 1, from 300 to 379: score 50.1, E = 7.1e-12 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe d+ +Vy+ d+t y+ti+v+ t+++eVi a+++K+g + pf06711 300 DEVLFKVYCMDHT---YTTIRVPVATSVKEVISAVADKLGS-----G 338 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred + +++ + +gge vL +++ + l+ ++r++ + re+ pf06711 339 EGLIIV---KMSSGGEKV-VLKPNDVSVFTTLTI-----NGRLFACPREQ 379 <-* pf06711 - - PF00617.10.fs: domain 1 of 1, from 401 to 585: score 184.8, E = 1.9e-52 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +l ++ +lA Q+T+ + elf + e+ + + g+ fk pf06711 401 ELMSSKDLAYQMTIYDWELFNCVHELELIY--------HTFGRHNFK 439 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev + n+d++ ++fN+ + +v ++I + +kR+++ pf06711 440 KTT---ANLDLFLRRFNEIQFWVVTEICLCS-----------QLSKRVQL 475 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI ++kfI +A hc+e++N+nS +aI+ +L++ +++RL +TWek+p++ +k+ pf06711 476 LKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKF- 524 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs e + Lmd++rN++ yR ++ + p P +PF +++++ pf06711 525 YAEFESLMDPSRNHRAYRLTVAKLEP-------------PLIPFMPLLIK 561 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* D tf++eGn+++ nlvNF+K+r+ pf06711 562 DMTFTHEGNKTFID------NLVNFEKMRM 585 PF00617.10.ls: domain 1 of 1, from 401 to 585: score 186.6, E = 5.4e-53 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +l ++ +lA Q+T+ + elf + e+ + + g+ fk pf06711 401 ELMSSKDLAYQMTIYDWELFNCVHELELIY--------HTFGRHNFK 439 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev + n+d++ ++fN+ + +v ++I + +kR+++ pf06711 440 KTT---ANLDLFLRRFNEIQFWVVTEICLCS-----------QLSKRVQL 475 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI ++kfI +A hc+e++N+nS +aI+ +L++ +++RL +TWek+p++ +k+ pf06711 476 LKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKF- 524 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs e + Lmd++rN++ yR ++ + p P +PF +++++ pf06711 525 YAEFESLMDPSRNHRAYRLTVAKLEP-------------PLIPFMPLLIK 561 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* D tf++eGn+++ nlvNF+K+r+ pf06711 562 DMTFTHEGNKTFID------NLVNFEKMRM 585 //