hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-06590527/chunk_1/iprscan-20080813-06590527.nocrc
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Query sequence: pf06711
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00147                                                 371.4   5.5e-107   1
SM00229                                                  40.4    2.4e-07   1
SM00100                                                  33.4      3e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00100     1/1       1   107 [.     1   123 []    33.4    3e-05
SM00229     1/1     127   266 ..     1   172 []    40.4  2.4e-07
SM00147     1/1     400   642 ..     1   261 []   371.4 5.5e-107

Alignments of top-scoring domains:
SM00100: domain 1 of 1, from 1 to 107: score 33.4, E = 3e-05
                   *->lfkaldaeelreladalepvrypaGevifrqGdpgdsfYiivsGeve
                             + ++ ++  +++      + +f qG+ g+s+Yii++G+v 
     pf06711     1    ------CASILIISLFIFL------CLVFNQGEEGTSWYIILKGSVN 35   

                   vyktrlstledgreqilatlgpGdfFGElall....rrarsaaavalvel
                   v+          +  +++tl+ Gd FG lal+++ +r+a  +  + ++++
     pf06711    36 VVIY--------GKGVVCTLHEGDDFGKLALVndapRAASIVLREDNCHF 77   

                   atllridferflqllpenpqlllelllell<-*
                    ++++ df+r+l+ +++n  +l+e+ +  l   
     pf06711    78 LRVDKEDFNRILRDVEANTVRLKEHDQDVL    107  

SM00229: domain 1 of 1, from 127 to 266: score 40.4, E = 2.4e-07
                   *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi
                      ++++++++Gt+ek++eh +e+   +     a ++ +++F++++ +F+
     pf06711   127    QQKYTVMSGTPEKILEHFLETIRLEATLNEATDSVLNDFIMMHCVFM 173  

                   ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedy.sknaipvg
                   + ++L+ +L+++Y a p++             +  ++  dy + n     
     pf06711   174 PNTQLCPALVAHYHAQPSQ-------------GTEQEKMDYaLNN----- 205  

                   faetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeelf
                                    ++rV++++++W + y     ed+ + +fLee f
     pf06711   206 -----------------KRRVIRLVLQWAAMYGDLLQEDDVSMAFLEE-F 237  

                   lelvedkkdkgpglek.....slanilerls<-*
                   +  v d+  +++  + +++ ++l +i++++s   
     pf06711   238 YVSVSDD--ARMIAALkeqlpELEKIVKQIS    266  

SM00147: domain 1 of 1, from 400 to 642: score 371.4, E = 5.5e-107
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      + l+++++lA Q+T+ d+elF+++++ El+++++g++++k  ++   
     pf06711   400    FELMSSKDLAYQMTIYDWELFNCVHELELIYHTFGRHNFKKTTA--- 443  

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    nl++f +rfNe+++wV+teI+++ +  ++kR+++l+kFIk+A+hc+e++
     pf06711   444 -NLDLFLRRFNEIQFWVVTEICLCSQ--LSKRVQLLKKFIKIAAHCKEYK 490  

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   N+nS++AIv++Ls+ ++sRL++TWekl+sk+kk++ e e+l+dps rN++
     pf06711   491 NLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPS-RNHR 539  

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   +YR ++++++      pp +Pf+++++kD+tf++egn++f++    +lvN
     pf06711   540 AYRLTVAKLE------PPLIPFMPLLIKDMTFTHEGNKTFID----NLVN 579  

                   FeKrrkiakilreirqlqsacqpynlkpnr.....ndiqellrasrplev
                   FeK+r+ia++ r++r+++s  qp n+++ + +++++d++++ r+   l+v
     pf06711   580 FEKMRMIANTARTVRYYRS--QPFNPDAAQanknhQDVRSYVRQ---LNV 624  

                   lpeeedelyelSlriEPrv<-*
                   ++++  +l ++S+r+EPr    
     pf06711   625 IDNQR-TLSQMSHRLEPRR    642  

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