hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-07055705/chunk_1/iprscan-20080813-07055705.nocrc
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Query sequence: pf06787
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00335.10.fs Tetraspanin family                          24.7    1.6e-06   1
PF00335.10.ls Tetraspanin family                          11.9    1.9e-06   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00335.10.fs   1/1      38   128 ..     1   102 [.    24.7  1.6e-06
PF00335.10.ls   1/1      38   187 ..     1   291 []    11.9  1.9e-06

Alignments of top-scoring domains:
PF00335.10.fs: domain 1 of 1, from 38 to 128: score 24.7, E = 1.6e-06
                   *->clKyllfllNflfwLlGilllgvGiWllvdkgsfssllglssscfla
                      c+K+ l  lN++ +L+++ll+gv++W +               ++  
     pf06787    38    CSKNALCALNVVYMLVSLLLIGVAAWGKGL----------GLVSSIH 74   

                   apyvlIlavGaviflvgflGccGAikEsrclLglYfifLlllfilelaag
                   +   +I avG++++l++ +G +GA+   + lL +Y+i+L l+fi ++++ 
     pf06787    75 IIGGVI-AVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFVIS 123  

                   ilafv<-*
                   + +++   
     pf06787   124 CSCLA    128  

PF00335.10.ls: domain 1 of 1, from 38 to 187: score 11.9, E = 1.9e-06
                   *->clKyllfllNflfwLlGilllgvGiWllvdkgsfssllglssscfla
                      c+K+ l  lN++ +L+++ll+gv++W +               ++  
     pf06787    38    CSKNALCALNVVYMLVSLLLIGVAAWGKGL----------GLVSSIH 74   

                   apyvlIlavGaviflvgflGccGAikEsrclLglYfifLlllfilelaag
                   +   +I avG++++l++ +G +GA+   + lL +Y+i+L l+fi ++++ 
     pf06787    75 IIGGVI-AVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFVIS 123  

                   i.lafvfrdvkveselgetlkkalkkyydtpdysawlqrVdkWeIRsCLv
                   ++ +  +r+                k  d  + s+w             v
     pf06787   124 CsCLAINRS----------------KQTDVINASWW-------------V 144  

                   dsvCnltadFFteawdalQsqfkCCGPPvnggfyytDTlWfpqwssnyfs
                    s         +++ d l+++f CCG    +                   
     pf06787   145 MS---------NKTRDELERSFDCCG--LFN------------------- 164  

                   gnsevdriknvdcklwrnvvlCydcsvanasgkteeesprpcevsnctcc
                                                                     
     pf06787     - -------------------------------------------------- -    

                   ppsseccqdapsniyteGCkekvleflrenlliiagvaigiaviq<-*
                                         +++ ++       +v+++ +v q   
     pf06787   165 ----------------------LTTLYQQDYDFCTAVSVLGVVQQ    187  

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