hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-07121502/chunk_1/iprscan-20080813-07121502.nocrc
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Query sequence: pf07304
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07744.3.ls SPOC domain                                    175.3    1.4e-49   1
PF07744.3.fs SPOC domain                                    173.4    5.4e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07744.3.fs   1/1     147   283 ..     1   131 []   173.4  5.4e-49
PF07744.3.ls   1/1     147   283 ..     1   131 []   175.3  1.4e-49

Alignments of top-scoring domains:
PF07744.3.fs: domain 1 of 1, from 147 to 283: score 173.4, E = 5.4e-49
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgp...
                      W+G+L lk+ ++fp ++h+++G      d +v+++lL +++tg++  
     pf07304   147    WQGMLLLKN-SNFPSNMHLLQG------DLQVASSLLVEGSTGGkva 186  

                   qlritgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvs....
                   ql+it+Rlrldq+k+++v++ri+v++PN++a++l++P+s d++++s++  
     pf07304   187 QLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSssaa 236  

                   ....sedtnllrelvsYLksKqraGvislpergskq..ngrdlyifP<-*
                   +++ ++++++lr+lvsYLk+Kq+aGvislp++g+k+++n+++l++fP   
     pf07304   237 sdtaTSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDkeNTGVLHAFP    283  

PF07744.3.ls: domain 1 of 1, from 147 to 283: score 175.3, E = 1.4e-49
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgp...
                      W+G+L lk+ ++fp ++h+++G      d +v+++lL +++tg++  
     pf07304   147    WQGMLLLKN-SNFPSNMHLLQG------DLQVASSLLVEGSTGGkva 186  

                   qlritgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvs....
                   ql+it+Rlrldq+k+++v++ri+v++PN++a++l++P+s d++++s++  
     pf07304   187 QLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSssaa 236  

                   ....sedtnllrelvsYLksKqraGvislpergskq..ngrdlyifP<-*
                   +++ ++++++lr+lvsYLk+Kq+aGvislp++g+k+++n+++l++fP   
     pf07304   237 sdtaTSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDkeNTGVLHAFP    283  

//