# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opf07304.fasta.nr -Q pf07304.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pf07304, 316 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6837976 sequences Expectation_n fit: rho(ln(x))= 5.8061+/-0.000191; mu= 6.8886+/- 0.011 mean_var=93.9642+/-18.053, 0's: 29 Z-trim: 44 B-trim: 346 in 1/65 Lambda= 0.132310 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088940|dbj|BAD92917.1| RNA binding motif prot ( 316) 2056 402.2 5.8e-110 gi|10438163|dbj|BAB15185.1| unnamed protein produc ( 532) 2056 402.4 8.6e-110 gi|14140099|emb|CAC38861.1| one twenty two protein ( 957) 2056 402.6 1.3e-109 gi|118480583|tpg|DAA05818.1| TPA: TPA_exp: RNA bin ( 913) 2046 400.6 4.9e-109 gi|60656279|gb|AAX32703.1| RNA binding motif prote ( 933) 2046 400.7 5e-109 gi|60653225|gb|AAX29307.1| RNA binding motif prote ( 934) 2046 400.7 5e-109 gi|38565992|gb|AAH62316.1| RBM15 protein [Homo sap ( 957) 2046 400.7 5.1e-109 gi|14161373|gb|AAK54724.1|AF368064_1 putative RNA- ( 957) 2046 400.7 5.1e-109 gi|32363506|sp|Q96T37|RBM15_HUMAN Putative RNA-bin ( 977) 2046 400.7 5.1e-109 gi|73909175|gb|AAI03661.1| RBM15 protein [Homo sap ( 544) 2038 398.9 9.4e-109 gi|109013400|ref|XP_001100175.1| PREDICTED: RNA bi ( 957) 2041 399.7 9.8e-109 gi|28958098|gb|AAH47479.1| RBM15 protein [Homo sap ( 959) 2038 399.1 1.5e-108 gi|14140100|emb|CAC38862.1| one twenty two protein ( 969) 2038 399.1 1.5e-108 gi|73695234|gb|AAI03494.1| RBM15 protein [Homo sap ( 969) 2038 399.1 1.5e-108 gi|14161371|gb|AAK54723.1| putative RNA-binding mo ( 977) 2036 398.8 1.9e-108 gi|14041648|emb|CAC38829.1| OTT-MAL [Homo sapiens] (1883) 2038 399.4 2.5e-108 gi|14041646|emb|CAC38828.1| OTT-MAL [Homo sapiens] (1905) 2038 399.4 2.5e-108 gi|10433990|dbj|BAB14088.1| unnamed protein produc ( 925) 2028 397.2 5.3e-108 gi|14161369|gb|AAK54722.1|AF368062_1 putative RNA- ( 969) 2028 397.2 5.5e-108 gi|109013397|ref|XP_001100087.1| PREDICTED: RNA bi ( 969) 2023 396.3 1.1e-107 gi|109013393|ref|XP_001099997.1| PREDICTED: RNA bi ( 995) 2023 396.3 1.1e-107 gi|73959300|ref|XP_865906.1| PREDICTED: similar to ( 957) 2015 394.7 3.1e-107 gi|194036534|ref|XP_001929414.1| PREDICTED: simila ( 959) 2010 393.8 5.9e-107 gi|194665526|ref|XP_614275.2| PREDICTED: similar t ( 958) 2005 392.8 1.1e-106 gi|149708732|ref|XP_001496267.1| PREDICTED: simila ( 960) 2004 392.6 1.3e-106 gi|57088155|ref|XP_537035.1| PREDICTED: similar to ( 969) 1997 391.3 3.3e-106 gi|73959298|ref|XP_865892.1| PREDICTED: similar to (1042) 1997 391.3 3.5e-106 gi|194036532|ref|XP_001929412.1| PREDICTED: simila (1006) 1992 390.4 6.7e-106 gi|74147567|dbj|BAE38672.1| unnamed protein produc ( 948) 1944 381.2 3.6e-103 gi|149025632|gb|EDL81875.1| rCG28930, isoform CRA_ ( 962) 1939 380.2 7.1e-103 gi|51593323|gb|AAH80828.1| Rbm15 protein [Mus musc ( 946) 1926 377.8 3.9e-102 gi|30802064|gb|AAH51409.1| Rbm15 protein [Mus musc ( 949) 1926 377.8 3.9e-102 gi|74212055|dbj|BAE40192.1| unnamed protein produc ( 949) 1926 377.8 3.9e-102 gi|34784964|gb|AAH57038.1| Rbm15 protein [Mus musc ( 953) 1926 377.8 4e-102 gi|111308226|gb|AAI20591.1| RNA binding motif prot ( 962) 1926 377.8 4e-102 gi|126311559|ref|XP_001381969.1| PREDICTED: simila ( 955) 1779 349.7 1.1e-93 gi|194036527|ref|XP_001927518.1| PREDICTED: simila ( 891) 1517 299.7 1.2e-78 gi|118102349|ref|XP_417944.2| PREDICTED: similar t (1059) 1473 291.3 4.6e-76 gi|118600664|gb|AAH28452.1| Rbm15 protein [Mus mus ( 217) 1293 256.4 3e-66 gi|149640569|ref|XP_001508270.1| PREDICTED: hypoth ( 293) 1184 235.7 6.9e-60 gi|125823894|ref|XP_001335820.1| PREDICTED: RNA bi ( 853) 995 200.0 1.1e-48 gi|47125240|gb|AAH70824.1| MGC83913 protein [Xenop ( 830) 961 193.5 1e-46 gi|47228760|emb|CAG07492.1| unnamed protein produc ( 841) 920 185.7 2.3e-44 gi|118096727|ref|XP_414264.2| PREDICTED: similar t ( 678) 740 151.3 4.3e-34 gi|31805540|gb|AAH01367.2| RBM15B protein [Homo sa ( 418) 730 149.2 1.1e-33 gi|75773735|gb|AAI04621.1| RBM15B protein [Bos tau ( 560) 730 149.3 1.4e-33 gi|60390636|sp|Q8NDT2|RB15B_HUMAN Putative RNA-bin ( 563) 730 149.3 1.4e-33 gi|119585543|gb|EAW65139.1| RNA binding motif prot ( 890) 730 149.4 2e-33 gi|76649014|ref|XP_872837.1| PREDICTED: RNA bindin ( 894) 730 149.4 2e-33 gi|141795846|gb|AAI39837.1| RBM15B protein [Homo s ( 563) 726 148.5 2.4e-33 >>gi|62088940|dbj|BAD92917.1| RNA binding motif protein (316 aa) initn: 2056 init1: 2056 opt: 2056 Z-score: 2129.4 bits: 402.2 E(): 5.8e-110 Smith-Waterman score: 2056; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:1-316) 10 20 30 40 50 60 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSP 10 20 30 40 50 60 70 80 90 100 110 120 pf0730 IRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASS 70 80 90 100 110 120 130 140 150 160 170 180 pf0730 KLKSPSQKQDGGTAPVASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KLKSPSQKQDGGTAPVASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGS 130 140 150 160 170 180 190 200 210 220 230 240 pf0730 TGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTA 190 200 210 220 230 240 250 260 270 280 290 300 pf0730 TSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALA 250 260 270 280 290 300 310 pf0730 KSEEDYLVMIIVRGAS :::::::::::::::: gi|620 KSEEDYLVMIIVRGAS 310 >>gi|10438163|dbj|BAB15185.1| unnamed protein product [H (532 aa) initn: 2056 init1: 2056 opt: 2056 Z-score: 2126.3 bits: 402.4 E(): 8.6e-110 Smith-Waterman score: 2056; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:217-532) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|104 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 190 200 210 220 230 240 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 250 260 270 280 290 300 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 310 320 330 340 350 360 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 370 380 390 400 410 420 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 430 440 450 460 470 480 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::::: gi|104 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS 490 500 510 520 530 >>gi|14140099|emb|CAC38861.1| one twenty two protein [Ho (957 aa) initn: 2056 init1: 2056 opt: 2056 Z-score: 2122.8 bits: 402.6 E(): 1.3e-109 Smith-Waterman score: 2056; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:642-957) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|141 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 620 630 640 650 660 670 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 680 690 700 710 720 730 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 740 750 760 770 780 790 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 800 810 820 830 840 850 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 860 870 880 890 900 910 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::::: gi|141 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS 920 930 940 950 >>gi|118480583|tpg|DAA05818.1| TPA: TPA_exp: RNA binding (913 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.8 bits: 400.6 E(): 4.9e-109 Smith-Waterman score: 2046; 99.684% identity (99.684% similar) in 316 aa overlap (1-316:598-913) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|118 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 570 580 590 600 610 620 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|118 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDGRGSLEKSQGDKRDRKNSASAERDRKH 630 640 650 660 670 680 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 690 700 710 720 730 740 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 750 760 770 780 790 800 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 810 820 830 840 850 860 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::::: gi|118 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS 870 880 890 900 910 >>gi|60656279|gb|AAX32703.1| RNA binding motif protein 1 (933 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.6 bits: 400.7 E(): 5e-109 Smith-Waterman score: 2046; 100.000% identity (100.000% similar) in 314 aa overlap (1-314:598-911) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|606 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 570 580 590 600 610 620 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 630 640 650 660 670 680 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 690 700 710 720 730 740 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 750 760 770 780 790 800 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 810 820 830 840 850 860 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::: gi|606 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQIGVRYENKKREN 870 880 890 900 910 920 gi|606 LALTLL 930 >>gi|60653225|gb|AAX29307.1| RNA binding motif protein 1 (934 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.6 bits: 400.7 E(): 5e-109 Smith-Waterman score: 2046; 100.000% identity (100.000% similar) in 314 aa overlap (1-314:598-911) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|606 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 570 580 590 600 610 620 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 630 640 650 660 670 680 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 690 700 710 720 730 740 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 750 760 770 780 790 800 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 810 820 830 840 850 860 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::: gi|606 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQIGVRYENKKREN 870 880 890 900 910 920 gi|606 LALTLLL 930 >>gi|38565992|gb|AAH62316.1| RBM15 protein [Homo sapiens (957 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.5 bits: 400.7 E(): 5.1e-109 Smith-Waterman score: 2046; 100.000% identity (100.000% similar) in 314 aa overlap (1-314:622-935) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|385 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 600 610 620 630 640 650 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 660 670 680 690 700 710 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 720 730 740 750 760 770 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 780 790 800 810 820 830 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 840 850 860 870 880 890 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::: gi|385 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQIGVRYENKKREN 900 910 920 930 940 950 gi|385 LALTLL >>gi|14161373|gb|AAK54724.1|AF368064_1 putative RNA-bind (957 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.5 bits: 400.7 E(): 5.1e-109 Smith-Waterman score: 2046; 99.684% identity (99.684% similar) in 316 aa overlap (1-316:642-957) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|141 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 620 630 640 650 660 670 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|141 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDGRGSLEKSQGDKRDRKNSASAERDRKH 680 690 700 710 720 730 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 740 750 760 770 780 790 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 800 810 820 830 840 850 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 860 870 880 890 900 910 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::::: gi|141 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS 920 930 940 950 >>gi|32363506|sp|Q96T37|RBM15_HUMAN Putative RNA-binding (977 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2112.3 bits: 400.7 E(): 5.1e-109 Smith-Waterman score: 2046; 100.000% identity (100.000% similar) in 314 aa overlap (1-314:642-955) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|323 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 620 630 640 650 660 670 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|323 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 680 690 700 710 720 730 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|323 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 740 750 760 770 780 790 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|323 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 800 810 820 830 840 850 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|323 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 860 870 880 890 900 910 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS :::::::::::::::::::::::::::::::::::::::::::: gi|323 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQIGVRYENKKREN 920 930 940 950 960 970 gi|323 LALTLL >>gi|73909175|gb|AAI03661.1| RBM15 protein [Homo sapiens (544 aa) initn: 2038 init1: 2038 opt: 2038 Z-score: 2107.6 bits: 398.9 E(): 9.4e-109 Smith-Waterman score: 2038; 100.000% identity (100.000% similar) in 313 aa overlap (1-313:217-529) 10 20 30 pf0730 RRLPEESGGRHLDRSPESDRPRKRHCAPSP :::::::::::::::::::::::::::::: gi|739 DSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSP 190 200 210 220 230 240 40 50 60 70 80 90 pf0730 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKH 250 260 270 280 290 300 100 110 120 130 140 150 pf0730 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGM 310 320 330 340 350 360 160 170 180 190 200 210 pf0730 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKV 370 380 390 400 410 420 220 230 240 250 260 270 pf0730 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGN 430 440 450 460 470 480 280 290 300 310 pf0730 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGAS ::::::::::::::::::::::::::::::::::::::::::: gi|739 KDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVEQRMKIWNSKL 490 500 510 520 530 540 316 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 07:09:39 2008 done: Wed Aug 13 07:12:14 2008 Total Scan time: 755.790 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]