hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17165685/chunk_1/iprscan-20090618-17165685.nocrc
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Query sequence: pf07901
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         101.2    2.9e-27   3
PF00096.16.fs Zinc finger, C2H2 type                          95.2    1.8e-25   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     439   463 ..     1    24 []    31.9  1.1e-06
PF00096.16.ls   1/3     439   463 ..     1    24 []    33.9  5.3e-07
PF00096.16.fs   2/3     469   493 ..     1    24 []    31.7  1.2e-06
PF00096.16.ls   2/3     469   493 ..     1    24 []    33.7  5.8e-07
PF00096.16.fs   3/3     499   521 ..     1    24 []    31.6  1.2e-06
PF00096.16.ls   3/3     499   521 ..     1    24 []    33.6  6.3e-07

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 439 to 463: score 31.9, E = 1.1e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++ +Cgk+++ +s+Lk+HlrtH   
     pf07901   439    HTCDYaGCGKTYTKSSHLKAHLRTH    463  

PF00096.16.ls: domain 1 of 3, from 439 to 463: score 33.9, E = 5.3e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++ +Cgk+++ +s+Lk+HlrtH   
     pf07901   439    HTCDYaGCGKTYTKSSHLKAHLRTH    463  

PF00096.16.fs: domain 2 of 3, from 469 to 493: score 31.7, E = 1.2e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y C++++Cg +F r+++L+rH r+H   
     pf07901   469    YHCDWdGCGWKFARSDELTRHYRKH    493  

PF00096.16.ls: domain 2 of 3, from 469 to 493: score 33.7, E = 5.8e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y C++++Cg +F r+++L+rH r+H   
     pf07901   469    YHCDWdGCGWKFARSDELTRHYRKH    493  

PF00096.16.fs: domain 3 of 3, from 499 to 521: score 31.6, E = 1.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+++Fsr+++L  H+++H   
     pf07901   499    FQCQ-KCDRAFSRSDHLALHMKRH    521  

PF00096.16.ls: domain 3 of 3, from 499 to 521: score 33.6, E = 6.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+++Fsr+++L  H+++H   
     pf07901   499    FQCQ-KCDRAFSRSDHLALHMKRH    521  

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