hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17165685/chunk_1/iprscan-20090618-17165685.nocrc
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Query sequence: pf07901
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  88.3      9e-22   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     439   463 ..     1    23 []    27.3   0.0022
SM00355      2/3     469   493 ..     1    23 []    32.7    5e-05
SM00355      3/3     499   521 ..     1    23 []    28.4    0.001

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 439 to 463: score 27.3, E = 0.0022
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C++ gCgk+++  ++Lk H+r+H   
     pf07901   439    HTCDYaGCGKTYTKSsHLKAHLRTH    463  

SM00355: domain 2 of 3, from 469 to 493: score 32.7, E = 5e-05
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C+++gCg++f + ++L+rH+r+H   
     pf07901   469    YHCDWdGCGWKFARSdELTRHYRKH    493  

SM00355: domain 3 of 3, from 499 to 521: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C++ fs+ ++L  Hm++H   
     pf07901   499    FQCQK-CDRAFSRSdHLALHMKRH    521  

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