hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-07300011/chunk_1/iprscan-20080813-07300011.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf08020 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00135 797.1 3.8e-235 18 SM00192 162.4 4.5e-44 3 SM00181 89.0 5.5e-22 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00135 1/18 1 37 [. 1 51 [] 43.6 2.6e-08 SM00135 2/18 38 80 .. 1 51 [] 58.1 1.2e-12 SM00135 3/18 81 122 .. 1 51 [] 36.4 4e-06 SM00181 1/4 149 188 .. 1 32 [] 20.2 0.29 SM00135 4/18 216 258 .. 1 51 [] 44.2 1.7e-08 SM00135 5/18 259 301 .. 1 51 [] 65.3 7.8e-15 SM00135 6/18 302 345 .. 1 51 [] 64.4 1.4e-14 SM00135 7/18 346 388 .. 1 51 [] 68.0 1.2e-15 SM00135 8/18 389 429 .. 1 51 [] 35.7 6.2e-06 SM00181 2/4 455 492 .. 1 32 [] 26.9 0.0028 SM00135 9/18 518 560 .. 1 51 [] 40.2 2.8e-07 SM00135 10/18 561 603 .. 1 51 [] 62.6 4.9e-14 SM00135 11/18 604 647 .. 1 51 [] 56.1 4.6e-12 SM00135 12/18 648 689 .. 1 51 [] 38.1 1.2e-06 SM00135 13/18 691 729 .. 1 51 [] 23.7 0.026 SM00181 3/4 756 794 .. 1 32 [] 28.4 0.00098 SM00135 14/18 821 863 .. 1 51 [] 33.6 2.8e-05 SM00135 15/18 865 912 .. 1 51 [] 21.8 0.098 SM00135 16/18 913 957 .. 1 51 [] 35.6 6.9e-06 SM00135 17/18 958 1000 .. 1 51 [] 46.3 4e-09 SM00135 18/18 1001 1041 .. 1 51 [] 23.7 0.026 SM00181 4/4 1070 1114 .. 1 32 [] 13.5 16 SM00192 1/3 1112 1151 .. 1 47 [] 60.1 2.8e-13 SM00192 2/3 1152 1188 .. 1 47 [] 49.1 6e-10 SM00192 3/3 1189 1226 .. 1 47 [] 53.3 3.3e-11 Alignments of top-scoring domains: SM00135: domain 1 of 18, from 1 to 37: score 43.6, E = 2.6e-08 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl l++Pr+ +A+D+ +g ++YWtDwg+ +kIera + pf08020 1 -------LdQPRA-IALDPSSG--FMYWTDWGEV-----PKIERAGM 32 dGtnr<-* dG+ r pf08020 33 DGSSR 37 SM00135: domain 2 of 18, from 38 to 80: score 58.1, E = 1.2e-12 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++++s + wP+g l++D+ e+ +lYW+D++l+ I +nl pf08020 38 FIIINSEIyWPNG-LTLDYEEQ--KLYWADAKLN------FIHKSNL 75 dGtnr<-* dGtnr pf08020 76 DGTNR 80 SM00135: domain 3 of 18, from 81 to 122: score 36.4, E = 4e-06 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +v+ +l++P +A+ +e+ lYWtDw+++ ++ ++++ pf08020 81 QAVVKGSLpHP---FALTLFED--ILYWTDWSTH-----SILACNKY 117 dGtnr<-* +G + pf08020 118 TGEGL 122 SM00181: domain 1 of 4, from 149 to 188: score 20.2, E = 0.29 *->eCa....pCsnGgtEqnGtCi......sytC.CpgpGytg.....rC +C ++++Cs+ C+ ++ ++ y+C Cp G ++ +++++C pf08020 149 PCGidngGCSH-------LCLmspvkpFYQCaCP-TGVKLlengkTC 187 e<-* + pf08020 188 K 188 SM00135: domain 4 of 18, from 216 to 258: score 44.2, E = 1.7e-08 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl vl +++++ + +++D++eg ++YWtD + + I+r+++ pf08020 216 IVLQLEDIrHAIA-IDYDPVEG--YIYWTDDEVR------AIRRSFI 253 dGtnr<-* dG++ pf08020 254 DGSGS 258 SM00135: domain 5 of 18, from 259 to 301: score 65.3, E = 7.8e-15 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +v+ ++ +P+g +AvDw+++ +lYWtD g+d +Ie+ +l pf08020 259 QFVVTAQIaHPDG-IAVDWVAR--NLYWTDTGTD------RIEVTRL 296 dGtnr<-* +Gt+r pf08020 297 NGTMR 301 SM00135: domain 6 of 18, from 302 to 345: score 64.4, E = 1.4e-14 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++l+s++l+ Pr+ +++D++ g ++YWtDwg+ +kIera l pf08020 302 KILISEDLeEPRA-IVLDPMVG--YMYWTDWGEI-----PKIERAAL 340 dGtnr<-* dG++r pf08020 341 DGSDR 345 SM00135: domain 7 of 18, from 346 to 388: score 68.0, E = 1.2e-15 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl vlv+++l+wP+g lA+D+ eg ++YW D+++d kIe++n pf08020 346 VVLVNTSLgWPNG-LALDYDEG--KIYWGDAKTD------KIEVMNT 383 dGtnr<-* dGt+r pf08020 384 DGTGR 388 SM00135: domain 8 of 18, from 389 to 429: score 35.7, E = 6.2e-06 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl rvlv+++++++ + + +++ ++YWtDw ++ +Ier+ pf08020 389 RVLVEDKIpHI---FGFTLLGD--YVYWTDWQRR------SIERVHK 424 dGtnr<-* +r pf08020 425 RSAER 429 SM00181: domain 2 of 4, from 455 to 492: score 26.9, E = 0.0028 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< +Ca+++++Cs+ C+ ++ + +C Cp G+++ ++ ++C+ pf08020 455 PCAeengGCSH-------LCLyrpqGLRCaCP-IGFELisdmkTCI 492 -* pf08020 - - SM00135: domain 9 of 18, from 518 to 560: score 40.2, E = 2.8e-07 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +g++ + l++D+ ++ r+YWtD +l+ +I+ra++ pf08020 518 VAIPLTGVkEASA-LDFDVTDN--RIYWTDISLK------TISRAFM 555 dGtnr<-* +G+ pf08020 556 NGSAL 560 SM00135: domain 10 of 18, from 561 to 603: score 62.6, E = 4.9e-14 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + +v+ gl+ P+g +AvDw+++ +lYW+D g++ +Ie+++l pf08020 561 EHVVEFGLdYPEG-MAVDWLGK--NLYWADTGTN------RIEVSKL 598 dGtnr<-* dG++r pf08020 599 DGQHR 603 SM00135: domain 11 of 18, from 604 to 647: score 56.1, E = 4.6e-12 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +vlv +l++Pr+ lA+D+ eg ++YWt wg + +kI ra + pf08020 604 QVLVWKDLdSPRA-LALDPAEG--FMYWTEWGGK-----PKIDRAAM 642 dGtnr<-* dG++r pf08020 643 DGSER 647 SM00135: domain 12 of 18, from 648 to 689: score 38.1, E = 1.2e-06 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + + +++ +g l++D+ ++ rlYWtD ++ Ie++n+ pf08020 648 -TTLVPNVgRANG-LTIDYAKR--RLYWTDLDTN------LIESSNM 684 dGtnr<-* G nr pf08020 685 LGLNR 689 SM00135: domain 13 of 18, from 691 to 729: score 23.7, E = 0.026 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++ ++l++P + + + + ++YWtDw+++ +Ieran pf08020 691 --VIADDLpHP---FGLTQYQD--YIYWTDWSRR------SIERANK 724 dGtnr<-* + + pf08020 725 TSGQN 729 SM00181: domain 3 of 4, from 756 to 794: score 28.4, E = 0.00098 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg.....rCe eCa++++ Cs+ C+ + +++ C+Cp + y+++ ++++C pf08020 756 ECAssngHCSH-------LCLavpvgGFVCgCP-AHYSLnadnrTCS 794 <-* pf08020 - - SM00135: domain 14 of 18, from 821 to 863: score 33.6, E = 2.8e-05 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +l ++l+++r+ +++D++++ lYW+D++++ +I+ a pf08020 821 IILPIHSLrNVRA-IDYDPLDK--QLYWIDSRQN------MIRKAQE 858 dGtnr<-* dG+ pf08020 859 DGSQG 863 SM00135: domain 15 of 18, from 865 to 912: score 21.8, E = 0.098 *->rvlvss.....gl.wPrgalAvDwiegedrlYWtDwgldgsddkakI +v+vss ++++ +P l +D++++ ++YWt +++ +I pf08020 865 TVVVSSvpsqnLEiQPYD-LSIDIYSR--YIYWTCEATN------VI 902 eranldGtnr<-* + +ldG + pf08020 903 NVTRLDGRSV 912 SM00135: domain 16 of 18, from 913 to 957: score 35.6, E = 6.9e-06 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl v+++ + Pr+ ++v + +g ++Y+t+ ++++ kIera l pf08020 913 GVVLKGEQdRPRA-IVVNPEKG--YMYFTNLQERSP----KIERAAL 952 dGtnr<-* dGt+r pf08020 953 DGTER 957 SM00135: domain 17 of 18, from 958 to 1000: score 46.3, E = 4e-09 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +vl+ sgl+ P + lA+D g +l+W+D+ l+ +Ie+++l pf08020 958 EVLFFSGLsKPIA-LALDSRLG--KLFWADSDLR------RIESSDL 995 dGtnr<-* G nr pf08020 996 SGANR 1000 SM00135: domain 18 of 18, from 1001 to 1041: score 23.7, E = 0.026 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl vl +s++ +P + + ++e+ +lYW+D ++ +Ie +++ pf08020 1001 IVLEDSNIlQP---VGLTVFEN--WLYWIDKQQQ------MIEKIDM 1036 dGtnr<-* +G + pf08020 1037 TGREG 1041 SM00181: domain 4 of 4, from 1070 to 1114: score 13.5, E = 16 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg........ +Ca+++++Cs+ +C+ +++++ +C+Cp + +++ + + pf08020 1070 PCAqdngGCSH-------ICLvkgdgTTRCsCP-MHLVLlqdelscg 1108 ...rCe<-* ++++C pf08020 1109 eppTCS 1114 SM00192: domain 1 of 3, from 1112 to 1151: score 60.1, E = 2.8e-13 *->tCspgepneFqCgngr..CIplswvCDGddDCgDGSDEdpaidpenC tCsp +F+C +g+ +CIp +w+CDG C+D+SDE +nC pf08020 1112 TCSPQ---QFTCFTGEidCIPVAWRCDGFTECEDHSDE------LNC 1149 ps<-* p pf08020 1150 PV 1151 SM00192: domain 2 of 3, from 1152 to 1188: score 49.1, E = 6e-10 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps Cs++ +FqC++g+CI+ +++C+Gd C D SDE +nC+ pf08020 1152 -CSES---QFQCASGQCIDGALRCNGDANCQDKSDE------KNCEV 1188 <-* pf08020 - - SM00192: domain 3 of 3, from 1189 to 1226: score 53.3, E = 3.3e-11 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps C + +F+C+ng+CI ++++CD+ DC+D SDE ++C + pf08020 1189 LCLID---QFRCANGQCIGKHKKCDHNVDCSDKSDE------LDCYP 1226 <-* pf08020 - - //