hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-07363191/chunk_1/iprscan-20080813-07363191.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pf08265
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 185.9    3.8e-51   7

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/7     154   176 ..     1    23 []    27.2   0.0022
SM00355      2/7     182   204 ..     1    23 []    23.8    0.024
SM00355      3/7     210   232 ..     1    23 []    27.4   0.0019
SM00355      4/7     238   260 ..     1    23 []    28.4    0.001
SM00355      5/7     266   288 ..     1    23 []    22.3    0.067
SM00355      6/7     294   316 ..     1    23 []    27.1   0.0025
SM00355      7/7     322   344 ..     1    23 []    29.7  0.00041

Alignments of top-scoring domains:
SM00355: domain 1 of 7, from 154 to 176: score 27.2, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  + L+rH+++H   
     pf08265   154    YECKE-CGKIFRYNsKLIRHQMSH    176  

SM00355: domain 2 of 7, from 182 to 204: score 23.8, E = 0.024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f+s  + + H + H   
     pf08265   182    FKCKE-CGKAFKSSyDCIVHEKNH    204  

SM00355: domain 3 of 7, from 210 to 232: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk  ss +aL++H+r+H   
     pf08265   210    YECKE-CGKGLSSNtALTQHQRIH    232  

SM00355: domain 4 of 7, from 238 to 260: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  a+ +H+r H   
     pf08265   238    YECKE-CGKAFRRSaAYLQHQRLH    260  

SM00355: domain 5 of 7, from 266 to 288: score 22.3, E = 0.067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k f  ++ ++ H+r+H   
     pf08265   266    YKCKE-CWKAFGCRsLFIVHQRIH    288  

SM00355: domain 6 of 7, from 294 to 316: score 27.1, E = 0.0025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++k a ++H+rvH   
     pf08265   294    YQCKE-CGKAFTQKiASIQHQRVH    316  

SM00355: domain 7 of 7, from 322 to 344: score 29.7, E = 0.00041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++++++++H++ H   
     pf08265   322    YECKV-CGKAFKWYgSFVQHQKLH    344  

//