hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-07491393/chunk_1/iprscan-20080813-07491393.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pf08939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00702.16.fs haloacid dehalogenase-like hydrolase        28.1    1.1e-07   2
PF00122.10.fs E1-E2 ATPase                                16.4    8.1e-05   1
PF00122.10.ls E1-E2 ATPase                               -82.4    9.8e-05   1
PF00702.16.ls haloacid dehalogenase-like hydrolase        20.0    0.00098   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00122.10.ls   1/1     135   393 ..     1   245 []   -82.4  9.8e-05
PF00122.10.fs   1/1     160   203 ..    32    76 ..    16.4  8.1e-05
PF00702.16.ls   1/1     431   835 ..     1   183 []    20.0  0.00098

Alignments of top-scoring domains:
PF00122.10.ls: domain 1 of 1, from 135 to 393: score -82.4, E = 9.8e-05
                   *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei
                       il++  + +++e + + +A +A+ +      ++++VlR+G  +e +
     pf08939   135    FILAVAAIKEIIEDIKRHKADNAVNK------KQTQVLRNG-AWEIV 174  

                   paeeLvpGDiVevkpGdrVPADgrvvege...stLkVDESaLTGESlPVe
                     e + +GDiV++k  + +PAD ++++++++++++++  S+L GE     
     pf08939   175 HWEKVNVGDIVIIKGKEYIPADTVLLSSSepqAMCYIETSNLDGETNLKI 224  

                   Khsdvvtp....................................dnp.le
                   ++  ++t + ++ ++  + +++ + ++++++  +  ++ + +++++++l+
     pf08939   225 RQGLPATSdikdvdslmrisgriecespnrhlydfvgnirldghGTVpLG 274  

                   rgnmVfaGTlvvs.GsltgvVtatGddTflgkIakLVeeAqs..sktPlQ
                    + ++  G + +++ + +g+V+ tG dT      kL+++  s++ k    
     pf08939   275 ADQILLRGAQLRNtQWVHGIVVYTGHDT------KLMQNSTSppLKLSNV 318  

                   rlldkfgkiltpvililavlvfiiwllrnfn.aafggswleg........
                    +++ +   +  +ili+  lv+ ++ ++  n+   g++w  + + ++ ++
     pf08939   319 ERITNVQILILFCILIAMSLVCSVGSAI-WNrRHSGKDWYLNlnyggasn 367  

                   llyalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpAvEt
                   + + +++ + l    +P+ L                        l  +E 
     pf08939   368 FGLNFLTFIILFNNLIPISL------------------------LVTLEV 393  

                   <-*
                      
     pf08939     -     -    

PF00122.10.fs: domain 1 of 1, from 160 to 203: score 16.4, E = 8.1e-05
                   *->pptAtVlRdGgkeeeipaeeLvpGDiVevkpGdrVPADgrvvege<-
                      +++++VlR+G  +e +  e + +GDiV++k  + +PAD ++++++  
     pf08939   160    KKQTQVLRNG-AWEIVHWEKVNVGDIVIIKGKEYIPADTVLLSSS   203  

                   *
                    
     pf08939     -   -    

PF00702.16.ls: domain 1 of 1, from 431 to 835: score 20.0, E = 0.00098
                   *->ikavvFDkDGTLtdgk...............................
                      +k ++ Dk+GTLt    + ++ +  +   +++++ +++++ ++++  
     pf08939   431    VKYIFSDKTGTLTCNVmqfkkctiagvaygqnsqfgdektfsdssll 477  

                   .....eppiaeaiveaaaelgl..lpleevekllgrgl.g..erillegg
                   ++ ++ +p a +i e++    + ++++ e e+    +  +++++++l+ +
     pf08939   478 enlqnNHPTAPIICEFLTMMAVchTAVPERERDKIIYQaAspDEGALVRA 527  

                   ltaell............................................
                   ++ +++  +++++++   ++ + +++ +  +  + ++ +++ +   ++++
     pf08939   528 AKQLNFvftgrtpdsviidslgqeeryellnvleftsarkrmsvivrtps 577  

                   ..................................................
                   ++ +   ++ ++   ++  ++++ ++ + ++ +   +++ ++      + 
     pf08939   578 gklrlyckgadtviydrlaetskykeitlkhleqfateglrtlcfavaei 627  

                   ...................................d.evlglial.dkly
                   ++++  + +    + +++  ++  + +++ +  +++ ++lg+ a +dkl 
     pf08939   628 sesdfqewravyqrastsvqnrllkleesyeliekNlQLLGATAIeDKLQ 677  

                   pgarealkaLkrrGikvailTggdr.naealle.................
                   + ++e+++ L ++ ik++ilTg+ +++a  ++ + +  +++ +    +++
     pf08939   678 DQVPETIETLMKADIKIWILTGDKQeTAINIGHsckllkknmgmivineg 727  

                   .......................................algla.lfdvi
                   + ++++++ +++ ++ ++  +++++     ++++ +    +g++++f  +
     pf08939   728 sldgtretlsrhcttlgdalrkendfaliidgktlkyalTFGVRqYFLDL 777  

                   idsdevggvgpivvgKPkpeifllalerlgvkpeevgpevlmVGDgvnDa
                     s+ +      ++ + +p  + +++e+ +++++ v   +l++GDg nD+
     pf08939   778 ALSCKAV-----ICCRVSPLQKSEVVEMVKKQVKVV---TLAIGDGANDV 819  

                   palaaAGvgvamgngg<-*
                    ++  A+vgv +       
     pf08939   820 SMIQTAHVGVGISGNE    835  

//