hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-07491393/chunk_1/iprscan-20080813-07491393.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf08939 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01652 ATPase-Plipid: phospholipid-translocati 1956.4 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpor 444.4 4.9e-131 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01652 1/1 77 1099 .. 1 1249 [] 1956.4 0 TIGR01494 1/7 127 229 .. 1 97 [. 86.7 2.3e-23 TIGR01494 2/7 372 456 .. 165 236 .. 81.6 7.8e-22 TIGR01494 5/7 665 715 .. 316 366 .. 78.5 6.8e-21 TIGR01494 6/7 785 895 .. 365 469 .. 139.2 3.6e-39 Alignments of top-scoring domains: TIGR01652: domain 1 of 1, from 77 to 1099: score 1956.4, E = 0 *->FpsNkIsTtKYtvlTFlPKnLFeQFkrfANiYFLvvAllqqvPilsp F+ N++sT+KY+ TFlP++L+ QF+r+AN +FL++Allqq+P++sp pf08939 77 FCNNHVSTAKYNIITFLPRFLYSQFRRAANSFFLFIALLQQIPDVSP 123 tnrgtsivPLavVLlvtaiKeAiEDirRrkrDkevNNrltevLegveNeN t+r+t++vPL+++L v+aiKe+iEDi+R+k+D++vN++ t vL++ pf08939 124 TGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRN----- 168 vltdnIsLWRklKKFIsytkedlseelKkkrisRKRHellvtkTVdtish pf08939 - -------------------------------------------------- - RsSLdSidayrlSvdydrleldeinleqganeasvvdrsltgssdgkFve g ++ pf08939 169 ---------------------------------------------GAWEI 173 ikWKdlrVGDIvKVkkderiPADllLLSSSepdGvCYVETaNLDGETNLK + W ++ VGDIv +k e+iPAD++LLSSSep+ +CY+ET NLDGETNLK pf08939 174 VHWEKVNVGDIVIIKGKEYIPADTVLLSSSEPQAMCYIETSNLDGETNLK 223 lRqAleeTqkmlteediknfsGeIecEqPnasLYsFqGnlkidgkakskI +Rq+l+ T++++++++++++sG+IecE Pn++LY+F+Gn+++dg pf08939 224 IRQGLPATSDIKDVDSLMRISGRIECESPNRHLYDFVGNIRLDGH----- 268 rqlPLspdNiLLRGctLrNTkwviGvVvYTGhDTKlmrNatkaGPsKRSr ++PL+ d+iLLRG++LrNT+wv G VvYTGhDTKlm+N+t + P+K S+ pf08939 269 GTVPLGADQILLRGAQLRNTQWVHGIVVYTGHDTKLMQNSTSP-PLKLSN 317 iEkelNflIiiLFllLivLclissvgagiysdadgkdldlirwYleldks +E+++N++I+iLF++Li+++l+ svg +i+++++ ++ +wYl l + pf08939 318 VERITNVQILILFCILIAMSLVCSVGSAIWNRRHSGK----DWYLNLNY- 362 eRPGGkdYeYrnaaangFfsfltalILFssLIPISLYVslElvKsvQAty ++a n++ +flt++ILF++LIPISL+V+lE+vK++QA y pf08939 363 -----------GGASNFGLNFLTFIILFNNLIPISLLVTLEVVKFTQA-Y 400 FInsDlemYhektDtPasvRtSNLnEeLGQVeYiFSDKTGTLTqNiMeFk FIn+Dl+m +e tDt a++RtSNLnEeLGQV+YiFSDKTGTLT+N+M+Fk pf08939 401 FINWDLDMHYEPTDTAAMARTSNLNEELGQVKYIFSDKTGTLTCNVMQFK 450 KcsIaGvsYgSdgltevkdalrerkgskveeesakvakDknsmlnelkil Kc+IaGv+Yg +++g +e k pf08939 451 KCTIAGVAYG----------QNSQFG------------------DE-K-- 469 ksnsqkapkgftFvdprLvkllktaknkpnakliqeFflaLAiCHtVvPe tF d+ L+ +l+ n+p+a++i eF++ +A+CHt+vPe pf08939 470 -----------TFSDSSLLENLQN--NHPTAPIICEFLTMMAVCHTAVPE 506 vnddddpeKGeitYQAaSPDEaALVkaArdlGFvfieRtpksIsllieer + d +i+YQAaSPDE+ALV aA+ l Fvf++Rtp s++i pf08939 507 RE-RD-----KIIYQAASPDEGALVRAAKQLNFVFTGRTPD--SVIIDSL 548 GkkGkkeekeYeiLnVlEFnSdRKRMSvIvRfPdgnPGDdgrilLlcKGA G +e +Ye+LnVlEF+S RKRMSvIvR P+g ++L+cKGA pf08939 549 G-----QEERYELLNVLEFTSARKRMSVIVRTPSG------KLRLYCKGA 587 DsVifkRLssssGsggnqvieeTkeHLenyAsEGLRTLciAyReLseeEY D+Vi+ RL+ + +++ e T +HLe++A+EGLRTLc+A +e+se+++ pf08939 588 DTVIYDRLA-----ETSKYKEITLKHLEQFATEGLRTLCFAVAEISESDF 632 eeWneeYneAstaLtedReekLdevAelIEkdLiLLGaTAIEDKLQeGVP +eW +Y+ Ast++ +R kL+e +elIEk+L LLGaTAIEDKLQ+ VP pf08939 633 QEWRAVYQRASTSVQ-NRLLKLEESYELIEKNLQLLGATAIEDKLQDQVP 681 etIElLreAGIKiWVLTGDKvETAINIGySCrLlsenMelivIkeesddI etIE+L +A IKiW LTGDK+ETAINIG SC+Ll nM ivI+e s pf08939 682 ETIETLMKADIKIWILTGDKQETAINIGHSCKLLKKNMGMIVINEGS--- 728 relEdagdldatervveaaikkiLkeyfelegteeefnelkkdhvpsgnv ld t+ + ++ ++++ ++ +l k ++++ pf08939 729 --------LDGTR----ETLS------RHCTTLGD---ALRK----ENDF 753 ALvIDGksLkyaLdeeDlekeFLqLAlkCkAViCCRVSPsQKAdVVkLVK AL+IDGk+LkyaL + ++++FL+LAl+CkAViCCRVSP+QK++VV +VK pf08939 754 ALIIDGKTLKYALTFG-VRQYFLDLALSCKAVICCRVSPLQKSEVVEMVK 802 kstGrlskiTLAIGDGANDVSMIQeADVGVGIsGkEGmQAvMASDFAIgQ k ++++TLAIGDGANDVSMIQ+A+VGVGIsG+EG QA+++SD++I+Q pf08939 803 K---QVKVVTLAIGDGANDVSMIQTAHVGVGISGNEGLQAANSSDYSIAQ 849 FrFLekLLLVHGrWSYkRiskmIlYfFYKNlifalilFWYsfyngFsGqt F++L+ LL HG+W+Y+R+sk+IlY+FYKN ++++i+ W++f+ngFsGq+ pf08939 850 FKYLKNLLMIHGAWNYNRVSKCILYCFYKNIVLYIIEIWFAFVNGFSGQI 899 lyedWymvlYNvfFTalPVivLGvfDqDvsaslslryPqLYreGqkgkef l+e+W+++lYNv FTa P+ +LG+f++++ + +l+yP+LY+ q++ f pf08939 900 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDF 949 stkvFwgwmldglyQSlviFffpilayklgdfvssGevddfssvGvivfT +tkvFw+++l+gl++S ++F+fp++a+ +g++ +G+++d++ +G++v+T pf08939 950 NTKVFWVHCLNGLFHSVILFWFPLKALQYGTAFGNGKTSDYLLLGNFVYT 999 alVvvvnlkiaLeinrWnwisliaiwgSiLvwlifvivyssifptlPadi +V++v+lk++Le+ +W+w+s+iaiwgSi w +f+++yss +p +P pf08939 1000 FVVITVCLKAGLETSYWTWFSHIAIWGSIALWVVFFGIYSSLWPAIPM-- 1047 srefykaakrvmstfgFWlvLlvivlisLLPrFtykalqrlfrPtdyeiV ++++ + a+++ s+++FW +Ll i+++sLL ++ yk ++r+ ++t +++V pf08939 1048 APDMSGEAAMLFSSGVFWMGLLFIPVASLLLDVVYKVIKRTAFKTLVDEV 1097 qE<-* qE pf08939 1098 QE 1099 TIGR01494: domain 1 of 7, from 127 to 229: score 86.7, E = 2.3e-23 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrng.gve ++ +++llf+l+++++ke +ed++r+ +d+ +n++ + vlrng ++ pf08939 127 YTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRNGaWEI 173 isskdlvvGDiVlvkkGdivPADgvLLsg.....scyVdessLTGEsnpv ++ +++ vGDiV++k + +PAD vLLs+++++ +cy+++s+L+GE+n++ pf08939 174 VHWEKVNVGDIVIIKGKEYIPADTVLLSSsepqaMCYIETSNLDGETNLK 223 lKtdap<-* +++ +p pf08939 224 IRQGLP 229 TIGR01494: domain 2 of 7, from 372 to 456: score 81.6, E = 7.8e-22 *->flralillviaiPiaLpvavtialavgdk.............rmail fl+++il++++iPi+L v+++++++ ++ + + + + ++++ a++ pf08939 372 FLTFIILFNNLIPISLLVTLEVVKFTQAYfinwdldmhyeptDTAAM 418 vrslnalEelGqvdyicsDKTGTLTenkmtfkkvyigg<-* +r++n++EelGqv+yi+sDKTGTLT+n+m+fkk++i+g pf08939 419 ARTSNLNEELGQVKYIFSDKTGTLTCNVMQFKKCTIAG 456 TIGR01494: domain 5 of 7, from 665 to 715: score 78.5, E = 6.8e-21 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +llG+taieD+L+++v+etIe+L++a ik+w+lTGD++eTAi+I+++ pf08939 665 QLLGATAIEDKLQDQVPETIETLMKADIKIWILTGDKQETAINIGHS 711 cglf<-* c+l+ pf08939 712 CKLL 715 TIGR01494: domain 6 of 7, from 785 to 895: score 139.2, E = 3.6e-39 *->lfARvsPeqKaeiVellqkr.gaiVamiGDGaNDapALkaADVGiai +++RvsP+qK e+Ve+++k+ ++++++iGDGaND+++++ A+VG++i pf08939 785 ICCRVSPLQKSEVVEMVKKQvKVVTLAIGDGANDVSMIQTAHVGVGI 831 g......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyynl +++++ +A++++D++++++ +l ll+ hG w+y+r++k+ily++y+n+ pf08939 832 SgneglqAANSSDYSIAQF-KYLKNLLMIHGAWNYNRVSKCILYCFYKNI 880 iliillfvlsvinll<-* +l+i+ ++++++n + pf08939 881 VLYIIEIWFAFVNGF 895 //