hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-07561864/chunk_1/iprscan-20080813-07561864.nocrc
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Query sequence: pf09883
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00231                                                 271.5    6.3e-77   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00231    1/2    1927  2082 ..     1   199 []   155.1  7.2e-42
SM00231    2/2    2086  2242 ..     1   199 []   116.4  3.1e-30

Alignments of top-scoring domains:
SM00231: domain 1 of 2, from 1927 to 2082: score 155.1, E = 7.2e-42
                   *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl
                      +C++p+Gl +g i dsqi as++ g        +w++++aRln++g+
     pf09883  1927    DCRMPMGLSTGIISDSQIKASEFLG--------YWEPRLARLNNGGS 1965 

                   nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGrr
                        ++aW+ +k++ e+        +wi+vD+++  + +tg++T+++++
     pf09883  1966 -----YNAWSVEKLAAEFA-----SKPWIQVDMQKE-VIITGIqTQGAKH 2004 

                   rrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtges
                        + +  ++t+++vay+ +           +W  +k    +n+t+++
     pf09883  2005 -----YLKSCYTTEFYVAYSSNQ---------INWQIFK----GNSTRNV 2036 

                   kvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlEL
                   + F+gN da+t++ n f+pPivARY+Ri Pt+        +n+++lRlEL
     pf09883  2037 MYFNGNSDASTIKENQFDPPIVARYIRISPTR-------AYNRPTLRLEL 2079 

                   lGC<-*
                    GC   
     pf09883  2080 QGC    2082 

SM00231: domain 2 of 2, from 2086 to 2242: score 116.4, E = 3.1e-30
                   *->eCneplGleggeiadsqitassstgaarelgll..gwaakiaRlngn
                      +C +plG+e+g+i + qitass+ ++     +++++w++ +aRln  
     pf09883  2086    GCSTPLGMENGKIENKQITASSFKKS-----WWgdYWEPFRARLNAQ 2127 

                   glnedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitG
                   g      ++aW ++ n +          +w+ +DL++ + ++t++ T++ 
     pf09883  2128 GR-----VNAWQAKANNN---------KQWLEIDLLK-IKKITAIiTQGC 2162 

                   rrrrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtg
                   +       +++ +v+ y + ++ +         G+ W +y+    +++  
     pf09883  2163 KS-----LSSEMYVKSYTI-HYSE--------QGVEWKPYR----LKSSM 2194 

                   eskvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRl
                    +k+F+gN +  ++v n f+pPi+ R++R++P +       w+  i+lRl
     pf09883  2195 VDKIFEGNTNTKGHVKNFFNPPIISRFIRVIPKT-------WNQSIALRL 2237 

                   ELlGC<-*
                   EL+GC   
     pf09883  2238 ELFGC    2242 

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