hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08030873/chunk_1/iprscan-20080813-08030873.nocrc
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Query sequence: pf10182
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                  93.0    3.5e-23   1
SM00252                                                  77.9    1.3e-18   1
SM00109                                                  43.4      3e-08   1
SM00404                                                  18.4     0.0026   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/1       4    50 ..     1    61 []    43.4    3e-08
SM00404    1/1     147   269 ..     1    92 []    18.4   0.0026
SM00252    1/1    1253  1356 ..     1    87 []    77.9  1.3e-18
SM00462    1/1    1389  1526 ..     1   156 []    93.0  3.5e-23

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 4 to 50: score 43.4, E = 3e-08
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+ + f+k++ C vC++ i g         g +C++Ck+ cHkkC
     pf10182     4    HTFKNKAFkKSKVCGVCKQIIDGQ--------GISCRACKYSCHKKC 42   

                   aekvpaqshksglsC<-*
                    +kv         +C   
     pf10182    43 EAKVVI-------PC    50   

SM00404: domain 1 of 1, from 147 to 269: score 18.4, E = 0.0026
                   *->tvkhyhytgWpDhvekdsgvPe.dsileflravrk........PivV
                              gWp+      ++P  d + ++++a ++  +++ ++ +v+
     pf10182   147    LNPKIMDVGWPEL-----HAPPlDKMCTICKAQESwlnsnlqhVVVI 188  

                   HCSAGvGRTGtfvaidillqq...........................vd
                   HC  G GR G++++ ++   + + + ++  ++   ++  +++ +   +++
     pf10182   189 HCRGGKGRIGVVISSYMHFTNvsasadqaldrfamkkfyddkvsalmqPS 238  

                   ifdtvkelRsqRpgmvqteeQYlFlyralle<-*
                    + +v+ l     g+v++++  lFl+ ++l    
     pf10182   239 QKRYVQFLSGLLSGSVKMNASPLFLHFVILH    269  

SM00252: domain 1 of 1, from 1253 to 1356: score 77.9, E = 1.3e-18
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                        WY  +isRe+A ++Lk   +++G+F+vRdS s++g+y L ++v +
     pf10182  1253    KFWYKADISREQAIAMLKD--KEPGSFIVRDSHSFRGAYGLAMKVAt 1297 

                   .................gkvkHyrIrrtddgkfylggt.prrkFpsL.eL
                   ++++  + +++ ++  ++ v+H++I++t+ ++++l g++++++F sL+ L
     pf10182  1298 pppsvlqlnkkagdlanELVRHFLIECTP-KGVRLKGCsNEPYFGSLtAL 1346 

                   vehYqknslg<-*
                   v  ++ ++l    
     pf10182  1347 VCQHSITPLA    1356 

SM00462: domain 1 of 1, from 1389 to 1526: score 93.0, E = 3.5e-23
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                       +g++++V+YL sve+++ +       g q++q+a++    ++  + 
     pf10182  1389    KQGAACNVWYLNSVEMESLT-------GHQAIQKALSITLvqEPPPV 1428 

                   pqkvilsvSsdgvklidektk.qvlaehplrrIsfcaadpq.r.wnt.Gg
                    + v+++vS +g++l+d+++k ++++++p+++++fca dpq+r+w ++G 
     pf10182  1429 STVVHFKVSAQGITLTDNQRKlFFRRHYPVNSVIFCALDPQdRkWIKdGP 1478 

                   dgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigq
                         ++vFg++ar++gs      ++ + CH+F   +++   ++++++ 
     pf10182  1479 -----SSKVFGFVARKQGS------ATDNVCHLFAEHDPE---QPASAIV 1514 

                   aFqvayelklkarse<-*
                   +F   +++ +  ++    
     pf10182  1515 NF---VSKVMIGSPK    1526 

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