hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08094335/chunk_1/iprscan-20080813-08094335.nocrc
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Query sequence: pf10233
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF05986.4.ls ADAM-TS Spacer 1                           191.4      2e-54   1
PF05986.4.fs ADAM-TS Spacer 1                           189.5    7.6e-54   1
PF08686.1.fs PLAC (protease and lacunin) domain          59.4    1.1e-15   1
PF08686.1.ls PLAC (protease and lacunin) domain          61.4    2.8e-15   1
PF00090.9.fs Thrombospondin type 1 domain                40.5    1.6e-11   5
PF00090.9.ls Thrombospondin type 1 domain                36.1    1.2e-07   3

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF05986.4.ls   1/1     130   242 ..     1   128 []   191.4    2e-54
PF05986.4.fs   1/1     130   242 ..     1   128 []   189.5  7.6e-54
PF00090.9.ls   1/3     257   312 ..     1    55 []     7.6   0.0071
PF00090.9.ls   2/3     319   372 ..     1    55 []    16.8  0.00055
PF00090.9.ls   3/3     435   485 ..     1    55 []    11.6   0.0023
PF08686.1.fs   1/1     495   529 ..     1    35 []    59.4  1.1e-15
PF08686.1.ls   1/1     495   529 ..     1    35 []    61.4  2.8e-15

Alignments of top-scoring domains:
PF05986.4.ls: domain 1 of 1, from 130 to 242: score 191.4, E = 2e-54
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                        ++G F++ ++  GY +Vv+IP G++hI++rE++ S      ny+A
     pf10233   130    DAIEGFFNDSLPRGGYMEVVQIPRGSVHIEVREVAMSK-----NYIA 171  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   Lk++  ++ y++NG wti++p++ f++aGT f+Y r ++d    +pEsL+
     pf10233   172 LKSEG-DD-YYINGAWTIDWPRK-FDVAGTAFHYKR-PTD----EPESLE 213  

                   atGPtnepLivqvLfqggapnpgikYeYtiP<-*
                   a+GPt+e Liv+vL+q  ++n gi+Y++++P   
     pf10233   214 ALGPTSENLIVMVLLQ--EQNLGIRYKFNVP    242  

PF05986.4.fs: domain 1 of 1, from 130 to 242: score 189.5, E = 7.6e-54
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                        ++G F++ ++  GY +Vv+IP G++hI++rE++ S      ny+A
     pf10233   130    DAIEGFFNDSLPRGGYMEVVQIPRGSVHIEVREVAMSK-----NYIA 171  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   Lk++  ++ y++NG wti++p++ f++aGT f+Y r ++d    +pEsL+
     pf10233   172 LKSEG-DD-YYINGAWTIDWPRK-FDVAGTAFHYKR-PTD----EPESLE 213  

                   atGPtnepLivqvLfqggapnpgikYeYtiP<-*
                   a+GPt+e Liv+vL+q  ++n gi+Y++++P   
     pf10233   214 ALGPTSENLIVMVLLQ--EQNLGIRYKFNVP    242  

PF00090.9.ls: domain 1 of 3, from 257 to 312: score 7.6, E = 0.0071
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe....
                       +  +WS+CS TC +G++    vc+          +    vq++  +
     pf10233   257    WNHQPWSECSATCAGGVQRQEVVCK--------RLDDNSIVQNnycd 295  

                   ......leteaCdmmdkC<-*
                   ++++++   +aC + ++C   
     pf10233   296 pdskppENQRAC-NTEPC    312  

PF00090.9.ls: domain 2 of 3, from 319 to 372: score 16.8, E = 0.00055
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe....
                         + W +CS+TC +G+rtR  +c  ++     g++ +++   ++  
     pf10233   319    ---GDWLECSKTCDGGMRTRAVLCIRKI-----GPSEEETLDYsgcl 357  

                   ....leteaCdmmdkC<-*
                   +++++e e+C + + C   
     pf10233   358 thrpVEKEPC-NNQSC    372  

PF00090.9.ls: domain 3 of 3, from 435 to 485: score 11.6, E = 0.0023
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       +++ W +CS  CG G+++R+  c s   q   +++C ++v++   +
     pf10233   435    WVTGDWGQCSAQCGLGQQMRTVQCLSYTGQ--ASSDCLETVRPPSMQ 479  

                   aCdmmdkC<-*
                    C    kC   
     pf10233   480 QC--ESKC    485  

PF08686.1.fs: domain 1 of 1, from 495 to 529: score 59.4, E = 1.1e-15
                   *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-*
                      eC+D++++A+C+lV+++k+Cs++y++q+CC++C++   
     pf10233   495    ECKDVNKVAYCPLVLKFKFCSRAYFRQMCCKTCQG    529  

PF08686.1.ls: domain 1 of 1, from 495 to 529: score 61.4, E = 2.8e-15
                   *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-*
                      eC+D++++A+C+lV+++k+Cs++y++q+CC++C++   
     pf10233   495    ECKDVNKVAYCPLVLKFKFCSRAYFRQMCCKTCQG    529  

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