hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08094335/chunk_1/iprscan-20080813-08094335.nocrc
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Query sequence: pf10233
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 114.2    1.5e-29   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/4     256   313 ..     1    66 []    27.0   0.0025
SM00209    2/4     315   373 ..     1    66 []    34.9  1.1e-05
SM00209    3/4     376   426 ..     1    66 []    15.7     0.19
SM00209    4/4     434   482 ..     1    66 []    36.5  3.6e-06

Alignments of top-scoring domains:
SM00209: domain 1 of 4, from 256 to 313: score 27.0, E = 0.0025
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +   +WS+CS +tC gG     v++ +     vc++   ++  +  
     pf10233   256    TWNHQPWSECS-ATCAGG-----VQRQEV----VCKRLDDNS-IVQN 291  

                   epCs.......EtrpCntqpnLqpCp<-*
                    +C++++++++ +r+Cnt+    pCp   
     pf10233   292 NYCDpdskppeNQRACNTE----PCP    313  

SM00209: domain 2 of 4, from 315 to 373: score 34.9, E = 1.1e-05
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  ++W +CS +tC gG     +rtR       c++  +p     +
     pf10233   315    EWFIGDWLECS-KTCDGG-----MRTRAV----LCIRKIGP---SEE 348  

                   epCs..........EtrpCntqpnLqpCp<-*
                   e  + ++  ++++ E++pCn q     Cp   
     pf10233   349 ETLDysgclthrpvEKEPCNNQ----SCP    373  

SM00209: domain 3 of 4, from 376 to 426: score 15.7, E = 0.19
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +   WS+C+   CG G     +++R       c+s   ++  ++ 
     pf10233   376    WVALD-WSECT-PKCGPG-----FKHRIV----LCKSSDLSKT-FPA 410  

                   epCs.EtrpCntqpnLqpCp<-*
                   ++C++E++p         C+   
     pf10233   411 AQCPeESKPPVRI----RCS    426  

SM00209: domain 4 of 4, from 434 to 482: score 36.5, E = 3.6e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       + +++W++CS ++CG G      ++Rt +    c s  +    +  
     pf10233   434    RWVTGDWGQCS-AQCGLG-----QQMRTVQ----CLSYTG----QAS 466  

                   epCs.EtrpCntqpnLqpCp<-*
                   ++C + +rp ++q     C+   
     pf10233   467 SDCLeTVRPPSMQ----QCE    482  

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