hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-08275240/chunk_1/iprscan-20080813-08275240.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf11915 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 212.7 1.1e-62 1 PF00621.11.ls RhoGEF domain 214.5 2.2e-61 1 PF00169.19.fs PH domain 120.8 2.6e-36 2 PF00169.19.ls PH domain 124.8 2.2e-34 2 PF01363.12.ls FYVE zinc finger 90.4 4.9e-24 1 PF01363.12.fs FYVE zinc finger 88.6 9.3e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.ls 1/1 292 474 .. 1 207 [] 214.5 2.2e-61 PF00621.11.fs 1/1 292 474 .. 1 207 [] 212.7 1.1e-62 PF00169.19.ls 1/2 505 603 .. 1 92 [] 70.7 4.2e-18 PF00169.19.fs 1/2 505 603 .. 1 92 [] 68.7 1.9e-20 PF01363.12.fs 1/1 636 702 .. 1 77 [] 88.6 9.3e-24 PF01363.12.ls 1/1 636 702 .. 1 77 [] 90.4 4.9e-24 PF00169.19.ls 2/2 726 822 .. 1 92 [] 54.1 4.3e-13 PF00169.19.fs 2/2 726 822 .. 1 92 [] 52.1 2.2e-15 Alignments of top-scoring domains: PF00621.11.ls: domain 1 of 1, from 292 to 474: score 214.5, E = 2.2e-61 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF +++Ell TE++Yv++L +ld+v+ +L+e+a ++ +++++ ++ iF pf11915 292 IANELLLTERAYVNRLDLLDQVFYCKLLEEA-NR-GSFPAEMVNKIF 336 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk sNi +i fh+ FL+++Le+r++++ + ++r+Gd++++l pf11915 337 SNISSINAFHSKFLLPELEKRMQEW-----------ETTPRIGDILQKL- 374 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd a+fl++YgeY++ +++A+el++ ++++pqF+ +++e+++ +g pf11915 375 APFLKMYGEYVKGFDNAMELVKN--MTERIPQFKSVVEEIQKQKICG--- 419 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ltLq+++l+PvqRi+rY+ LLk++L ++p+ ds + +d+kk+l++ pf11915 420 ---SLTLQHHMLEPVQRIPRYEMLLKDYLRKLPP--DSLDWNDAKKSLEI 464 lqdlaksiNe<-* + ++a+++N pf11915 465 ISTAASHSNS 474 PF00621.11.fs: domain 1 of 1, from 292 to 474: score 212.7, E = 1.1e-62 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF +++Ell TE++Yv++L +ld+v+ +L+e+a ++ +++++ ++ iF pf11915 292 IANELLLTERAYVNRLDLLDQVFYCKLLEEA-NR-GSFPAEMVNKIF 336 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk sNi +i fh+ FL+++Le+r++++ + ++r+Gd++++l pf11915 337 SNISSINAFHSKFLLPELEKRMQEW-----------ETTPRIGDILQKL- 374 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd a+fl++YgeY++ +++A+el++ ++++pqF+ +++e+++ +g pf11915 375 APFLKMYGEYVKGFDNAMELVKN--MTERIPQFKSVVEEIQKQKICG--- 419 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ltLq+++l+PvqRi+rY+ LLk++L ++p+ ds + +d+kk+l++ pf11915 420 ---SLTLQHHMLEPVQRIPRYEMLLKDYLRKLPP--DSLDWNDAKKSLEI 464 lqdlaksiNe<-* + ++a+++N pf11915 465 ISTAASHSNS 474 PF00169.19.ls: domain 1 of 2, from 505 to 603: score 70.7, E = 4.2e-18 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk......kkpkg +ikeG +lk ++ s ++Ry++Lf++ Lly+ +k + +++++ + pf11915 505 LIKEGQILKLAaRNTSAQERYLFLFNNMLLYCVPKFslvgskFTVRT 551 sipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqs + ++g++++++ + + +++F+++ ++r tl+lqa+s+++++eW+ka+q+ pf11915 552 RVGIDGMKIVETQNEEYPHTFQVSGkER-TLELQASSAQDKEEWIKALQE 600 air<-* i pf11915 601 TID 603 PF00169.19.fs: domain 1 of 2, from 505 to 603: score 68.7, E = 1.9e-20 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk......kkpkg +ikeG +lk ++ s ++Ry++Lf++ Lly+ +k + +++++ + pf11915 505 LIKEGQILKLAaRNTSAQERYLFLFNNMLLYCVPKFslvgskFTVRT 551 sipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqs + ++g++++++ + + +++F+++ ++r tl+lqa+s+++++eW+ka+q+ pf11915 552 RVGIDGMKIVETQNEEYPHTFQVSGkER-TLELQASSAQDKEEWIKALQE 600 air<-* i pf11915 601 TID 603 PF01363.12.fs: domain 1 of 1, from 636 to 702: score 88.6, E = 9.3e-24 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p+W+ D+ev++Cm C++pF+ lt+RrHHCRaCG ++C +Cs+ ++ l pf11915 636 PRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGYVVCWKCSDYKAQL 682 pylgiaallkndviekpvRVCdsCydrlnk<-* +y+g k VC++Cy+ ++ pf11915 683 EYDG----------GKLSKVCKDCYQIISG 702 PF01363.12.ls: domain 1 of 1, from 636 to 702: score 90.4, E = 4.9e-24 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p+W+ D+ev++Cm C++pF+ lt+RrHHCRaCG ++C +Cs+ ++ l pf11915 636 PRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGYVVCWKCSDYKAQL 682 pylgiaallkndviekpvRVCdsCydrlnk<-* +y+g k VC++Cy+ ++ pf11915 683 EYDG----------GKLSKVCKDCYQIISG 702 PF00169.19.ls: domain 2 of 2, from 726 to 822: score 54.1, E = 4.3e-13 *->vikeGwLlkkggkkswkkRyfvLfd...dvLlyykdkk.kkpkgsip + + +L+ +++ k w+k ++v+ +++ vL++y +++ + + +ip pf11915 726 SVVCSFLQYMEKSKPWQKAWCVIPKqdpLVLYMYGAPQdVRAQATIP 772 Lsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsai L g+ v++ p++ + +++F+++ + ++ ++a+see +++W+k i a+ pf11915 773 LLGYVVDEMPRSaDLPHSFKLTQsKS-VHSFAADSEELKQKWLKVILLAV 821 r<-* pf11915 822 T 822 PF00169.19.fs: domain 2 of 2, from 726 to 822: score 52.1, E = 2.2e-15 *->vikeGwLlkkggkkswkkRyfvLfd...dvLlyykdkk.kkpkgsip + + +L+ +++ k w+k ++v+ +++ vL++y +++ + + +ip pf11915 726 SVVCSFLQYMEKSKPWQKAWCVIPKqdpLVLYMYGAPQdVRAQATIP 772 Lsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsai L g+ v++ p++ + +++F+++ + ++ ++a+see +++W+k i a+ pf11915 773 LLGYVVDEMPRSaDLPHSFKLTQsKS-VHSFAADSEELKQKWLKVILLAV 821 r<-* pf11915 822 T 822 //