hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08275240/chunk_1/iprscan-20080813-08275240.nocrc
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Query sequence: pf11915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 212.6    3.5e-59   1
SM00233                                                 124.0    1.7e-32   2
SM00064                                                 117.6    1.4e-30   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     292   474 ..     1   211 []   212.6  3.5e-59
SM00233     1/2     505   605 ..     1    82 []    76.8  2.7e-18
SM00064     1/1     633   702 ..     1    81 []   117.6  1.4e-30
SM00233     2/2     726   824 ..     1    82 []    47.2  2.1e-09

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 292 to 474: score 212.6, E = 3.5e-59
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +++ELl TEr+YV+ L +l++vf+  L++ea++++   ++ + v+++
     pf11915   292    IANELLLTERAYVNRLDLLDQVFYCKLLEEANRGS---FPAEMVNKI 335  

                   FgpNieeiyefHrrFLd.eLeerveewllskdlKsernsviedsgerigd
                   F+ Ni +i  fH++FL++eLe+r++ew+                ++rigd
     pf11915   336 FS-NISSINAFHSKFLLpELEKRMQEWE---------------TTPRIGD 369  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   +++kl   ++f+k+Y+eY++ +++a+el k  m ++  p+F+ +++ei++
     pf11915   370 ILQKL---APFLKMYGEYVKGFDNAMELVKN-M-TERIPQFKSVVEEIQK 414  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   ++ c+     +ltL++++++PvQR+++Y +LLk++l++ ppd+ d +d+k
     pf11915   415 QKICG-----SLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAK 459  

                   kAleaikelasqvNe<-*
                   k le+i + as+ N    
     pf11915   460 KSLEIISTAASHSNS    474  

SM00233: domain 1 of 2, from 505 to 605: score 76.8, E = 2.7e-18
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk........kpkg
                      +ikeG++lk+  +++s ++ry++Lfn++Lly+ +k +  +++ + + 
     pf11915   505    LIKEGQILKLAarNtSAQERYLFLFNNMLLYCVPKfslvgskfTVRT 551  

                   sipLsgcsvre.p......cFeivt.drtlllqAeseeereeWvealqsa
                   ++ ++g++++e+ +++ +++F+++ ++rtl+lqA+s++++eeW++alq+ 
     pf11915   552 RVGIDGMKIVEtQneeyphTFQVSGkERTLELQASSAQDKEEWIKALQET 601  

                   iaka<-*
                   i+     
     pf11915   602 IDAF    605  

SM00064: domain 1 of 1, from 633 to 702: score 117.6, E = 1.4e-30
                   *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk
                      ++ap+W++D+e+ +C m+C+++F+ +trRrHHCR+CG ++C+kCs++
     pf11915   633    KRAPRWIRDNEVTMC-MKCKEPFNALTRRRHHCRACGYVVCWKCSDY 678  

                   kaplpklgkekkngknedftpvRVCdsCyerlsk<-*
                   ka l+++g +            +VC++Cy+ +s+   
     pf11915   679 KAQLEYDGGK----------LSKVCKDCYQIISG    702  

SM00233: domain 2 of 2, from 726 to 824: score 47.2, E = 2.1e-09
                   *->vikeGwLlkks.k.swkkryfvLfn...gvLlyyksk...kpkgsip
                       + + +L  +++++ w+k ++v+  +++ vL+ y  +++ + + +ip
     pf11915   726    SVVCSFLQYMEkSkPWQKAWCVIPKqdpLVLYMYGAPqdvRAQATIP 772  

                   Lsgcsvre.p.......cFeivt.drtlllqAeseeereeWvealqsaia
                   L g+ v+e p++ + +++F+++ ++ ++ ++A+see +++W++ +  a+ 
     pf11915   773 LLGYVVDEmPrsadlphSFKLTQsKSVHSFAADSEELKQKWLKVILLAVT 822  

                   ka<-*
                        
     pf11915   823 GE    824  

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