hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-08342503/chunk_1/iprscan-20080813-08342503.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00040 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 334.0 2.3e-97 10 PF00096.16.fs Zinc finger, C2H2 type 317.3 2.4e-92 10 PF01286.9.fs XPA protein N-terminal 45.6 3.1e-12 10 PF01096.9.fs Transcription factor S-II (TFIIS) 37.7 6e-11 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/10 255 277 .. 1 24 [] 32.4 8.1e-07 PF00096.16.ls 2/10 255 277 .. 1 24 [] 34.4 3.8e-07 PF00096.16.ls 3/10 283 305 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 3/10 283 305 .. 1 24 [] 33.6 3.9e-07 PF00096.16.ls 4/10 311 333 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 4/10 311 333 .. 1 24 [] 34.1 2.9e-07 PF00096.16.ls 5/10 339 361 .. 1 24 [] 34.1 4.6e-07 PF00096.16.fs 5/10 339 361 .. 1 24 [] 32.1 9.5e-07 PF00096.16.ls 6/10 367 389 .. 1 24 [] 38.3 2.4e-08 PF00096.16.fs 6/10 367 389 .. 1 24 [] 36.4 8.1e-08 PF00096.16.fs 7/10 395 417 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 7/10 395 417 .. 1 24 [] 37.4 4.7e-08 PF00096.16.fs 8/10 423 445 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 8/10 423 445 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 9/10 451 473 .. 1 24 [] 36.9 6.1e-08 PF00096.16.ls 9/10 451 473 .. 1 24 [] 38.9 1.7e-08 PF00096.16.fs 10/10 479 501 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 10/10 479 501 .. 1 24 [] 37.1 5.8e-08 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 10, from 255 to 277: score 32.4, E = 8.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ +s+L +H+r+H pg00040 255 YKCK-KCDKAFNKSSHLAQHQRIH 277 PF00096.16.ls: domain 2 of 10, from 255 to 277: score 34.4, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ +s+L +H+r+H pg00040 255 YKCK-KCDKAFNKSSHLAQHQRIH 277 PF00096.16.ls: domain 3 of 10, from 283 to 305: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s L++H+r+H pg00040 283 FKCK-ECGKAFNRGSYLTQHQRIH 305 PF00096.16.fs: domain 3 of 10, from 283 to 305: score 33.6, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s L++H+r+H pg00040 283 FKCK-ECGKAFNRGSYLTQHQRIH 305 PF00096.16.ls: domain 4 of 10, from 311 to 333: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s L++H+r+H pg00040 311 FKCE-ECGKAFNRGSYLTQHQRIH 333 PF00096.16.fs: domain 4 of 10, from 311 to 333: score 34.1, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s L++H+r+H pg00040 311 FKCE-ECGKAFNRGSYLTQHQRIH 333 PF00096.16.ls: domain 5 of 10, from 339 to 361: score 34.1, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+s ++H+r+H pg00040 339 FRCK-ECGKAFNRSSYVTQHQRMH 361 PF00096.16.fs: domain 5 of 10, from 339 to 361: score 32.1, E = 9.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+s ++H+r+H pg00040 339 FRCK-ECGKAFNRSSYVTQHQRMH 361 PF00096.16.ls: domain 6 of 10, from 367 to 389: score 38.3, E = 2.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s+L++H+r+H pg00040 367 FKCK-ECGKAFNRASHLTQHQRIH 389 PF00096.16.fs: domain 6 of 10, from 367 to 389: score 36.4, E = 8.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s+L++H+r+H pg00040 367 FKCK-ECGKAFNRASHLTQHQRIH 389 PF00096.16.fs: domain 7 of 10, from 395 to 417: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s+L+rH+r+H pg00040 395 FKCK-ECGKAFNRGSHLTRHQRIH 417 PF00096.16.ls: domain 7 of 10, from 395 to 417: score 37.4, E = 4.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r s+L+rH+r+H pg00040 395 FKCK-ECGKAFNRGSHLTRHQRIH 417 PF00096.16.fs: domain 8 of 10, from 423 to 445: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F s+L++H+r+H pg00040 423 FKCE-ECGKAFIWGSHLTQHQRVH 445 PF00096.16.ls: domain 8 of 10, from 423 to 445: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F s+L++H+r+H pg00040 423 FKCE-ECGKAFIWGSHLTQHQRVH 445 PF00096.16.fs: domain 9 of 10, from 451 to 473: score 36.9, E = 6.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+L++H+r+H pg00040 451 FKCK-ECGKAFTRSSHLTQHQRIH 473 PF00096.16.ls: domain 9 of 10, from 451 to 473: score 38.9, E = 1.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+L++H+r+H pg00040 451 FKCK-ECGKAFTRSSHLTQHQRIH 473 PF00096.16.fs: domain 10 of 10, from 479 to 501: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+L++H+ +H pg00040 479 FKCK-ECGKAFNRRSTLTQHQIIH 501 PF00096.16.ls: domain 10 of 10, from 479 to 501: score 37.1, E = 5.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+r+s+L++H+ +H pg00040 479 FKCK-ECGKAFNRRSTLTQHQIIH 501 //