hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08342503/chunk_1/iprscan-20080813-08342503.nocrc
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Query sequence: pg00040
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 266.4    2.3e-75  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10    144   166 ..     1    23 []     4.7       93
SM00355      2/10    255   277 ..     1    23 []    28.1   0.0012
SM00355      3/10    283   305 ..     1    23 []    28.8  0.00077
SM00355      4/10    311   333 ..     1    23 []    28.9  0.00069
SM00355      5/10    339   361 ..     1    23 []    26.9   0.0028
SM00355      6/10    367   389 ..     1    23 []    31.1  0.00015
SM00355      7/10    395   417 ..     1    23 []    30.0  0.00033
SM00355      8/10    423   445 ..     1    23 []    28.0   0.0013
SM00355      9/10    451   473 ..     1    23 []    30.0  0.00032
SM00355     10/10    479   501 ..     1    23 []    29.9  0.00035

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 144 to 166: score 4.7, E = 93
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C k+f + + L+    +H   
     pg00040   144    YNCNE-CEKVFYQSsKLIFPENIH    166  

SM00355: domain 2 of 10, from 255 to 277: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k f+  ++L +H+r+H   
     pg00040   255    YKCKK-CDKAFNKSsHLAQHQRIH    277  

SM00355: domain 3 of 10, from 283 to 305: score 28.8, E = 0.00077
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ + L++H+r+H   
     pg00040   283    FKCKE-CGKAFNRGsYLTQHQRIH    305  

SM00355: domain 4 of 10, from 311 to 333: score 28.9, E = 0.00069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ + L++H+r+H   
     pg00040   311    FKCEE-CGKAFNRGsYLTQHQRIH    333  

SM00355: domain 5 of 10, from 339 to 361: score 26.9, E = 0.0028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk f++ +  ++H+r+H   
     pg00040   339    FRCKE-CGKAFNRSsYVTQHQRMH    361  

SM00355: domain 6 of 10, from 367 to 389: score 31.1, E = 0.00015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f+++++L++H+r+H   
     pg00040   367    FKCKE-CGKAFNRAsHLTQHQRIH    389  

SM00355: domain 7 of 10, from 395 to 417: score 30.0, E = 0.00033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ ++L+rH+r+H   
     pg00040   395    FKCKE-CGKAFNRGsHLTRHQRIH    417  

SM00355: domain 8 of 10, from 423 to 445: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f + ++L++H+rvH   
     pg00040   423    FKCEE-CGKAFIWGsHLTQHQRVH    445  

SM00355: domain 9 of 10, from 451 to 473: score 30.0, E = 0.00032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ ++L++H+r+H   
     pg00040   451    FKCKE-CGKAFTRSsHLTQHQRIH    473  

SM00355: domain 10 of 10, from 479 to 501: score 29.9, E = 0.00035
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++++ L++H+ +H   
     pg00040   479    FKCKE-CGKAFNRRsTLTQHQIIH    501  

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