hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-08472842/chunk_1/iprscan-20080813-08472842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00259 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 804.7 4.6e-239 22 PF00023.20.fs Ankyrin repeat 779.7 1.6e-231 23 PF00791.10.ls ZU5 domain 232.8 7.1e-67 1 PF00791.10.fs ZU5 domain 230.8 2.8e-66 1 PF00531.12.ls Death domain 93.6 5.4e-25 1 PF00531.12.fs Death domain 91.7 1.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/22 79 111 .. 1 33 [] 14.5 0.23 PF00023.20.fs 1/23 79 111 .. 1 33 [] 12.5 0.017 PF00023.20.fs 2/23 112 144 .. 1 33 [] 42.5 7.3e-11 PF00023.20.ls 2/22 112 144 .. 1 33 [] 44.5 3.4e-10 PF00023.20.fs 3/23 145 177 .. 1 33 [] 41.6 1.3e-10 PF00023.20.ls 3/22 145 177 .. 1 33 [] 43.6 6.1e-10 PF00023.20.ls 4/22 178 204 .. 1 33 [] 11.8 0.58 PF00023.20.fs 4/23 178 202 .. 1 25 [. 21.6 4.8e-05 PF00023.20.ls 5/22 207 239 .. 1 33 [] 13.3 0.34 PF00023.20.fs 5/23 211 239 .. 5 33 .] 13.5 0.009 PF00023.20.ls 6/22 240 272 .. 1 33 [] 39.3 1.3e-08 PF00023.20.fs 6/23 240 268 .. 1 29 [. 37.4 1.9e-09 PF00023.20.fs 7/23 273 305 .. 1 33 [] 41.7 1.2e-10 PF00023.20.ls 7/22 273 305 .. 1 33 [] 43.7 5.9e-10 PF00023.20.fs 8/23 306 338 .. 1 33 [] 39.5 4.9e-10 PF00023.20.ls 8/22 306 338 .. 1 33 [] 41.5 2.6e-09 PF00023.20.fs 9/23 339 371 .. 1 33 [] 30.0 2.3e-07 PF00023.20.ls 9/22 339 371 .. 1 33 [] 32.0 2e-06 PF00023.20.ls 10/22 372 404 .. 1 33 [] 40.0 7.5e-09 PF00023.20.fs 10/23 372 404 .. 1 33 [] 38.0 1.3e-09 PF00023.20.ls 11/22 405 437 .. 1 33 [] 48.8 1.7e-11 PF00023.20.fs 11/23 405 437 .. 1 33 [] 46.8 4.5e-12 PF00023.20.ls 12/22 438 470 .. 1 33 [] 44.7 2.8e-10 PF00023.20.fs 12/23 438 470 .. 1 33 [] 42.7 6.2e-11 PF00023.20.ls 13/22 471 503 .. 1 33 [] 37.0 6.1e-08 PF00023.20.fs 13/23 473 503 .. 3 33 .] 35.3 7.3e-09 PF00023.20.fs 14/23 504 536 .. 1 33 [] 42.9 5.5e-11 PF00023.20.ls 14/22 504 536 .. 1 33 [] 44.9 2.5e-10 PF00023.20.ls 15/22 537 569 .. 1 33 [] 28.3 2.4e-05 PF00023.20.fs 15/23 537 569 .. 1 33 [] 26.3 2.3e-06 PF00023.20.ls 16/22 570 602 .. 1 33 [] 40.9 4.2e-09 PF00023.20.fs 16/23 570 602 .. 1 33 [] 38.9 7.5e-10 PF00023.20.ls 17/22 603 635 .. 1 33 [] 36.9 6.4e-08 PF00023.20.fs 17/23 603 635 .. 1 33 [] 34.9 9.4e-09 PF00023.20.ls 18/22 636 668 .. 1 33 [] 38.1 2.8e-08 PF00023.20.fs 18/23 636 668 .. 1 33 [] 36.1 4.4e-09 PF00023.20.fs 19/23 669 701 .. 1 33 [] 36.9 2.7e-09 PF00023.20.ls 19/22 669 701 .. 1 33 [] 38.9 1.6e-08 PF00023.20.ls 20/22 702 734 .. 1 33 [] 32.8 1.1e-06 PF00023.20.fs 20/23 702 734 .. 1 33 [] 30.8 1.3e-07 PF00023.20.ls 21/22 735 767 .. 1 33 [] 49.1 1.3e-11 PF00023.20.fs 21/23 735 767 .. 1 33 [] 47.1 3.7e-12 PF00023.20.ls 22/22 768 800 .. 1 33 [] 40.1 7e-09 PF00023.20.fs 22/23 768 800 .. 1 33 [] 38.1 1.2e-09 PF00023.20.fs 23/23 801 821 .. 1 21 [. 4.5 2.9 PF00791.10.fs 1/1 954 1058 .. 1 107 [] 230.8 2.8e-66 PF00791.10.ls 1/1 954 1058 .. 1 107 [] 232.8 7.1e-67 PF00531.12.ls 1/1 1447 1530 .. 1 87 [] 93.6 5.4e-25 PF00531.12.fs 1/1 1447 1530 .. 1 87 [] 91.7 1.7e-24 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 22, from 79 to 111: score 14.5, E = 0.23 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G LHlA++ g++++v +Ll + l +++ pg00259 79 NGLNGLHLASKEGHVKMVVELLHKEIILETTTK 111 PF00023.20.fs: domain 1 of 23, from 79 to 111: score 12.5, E = 0.017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G LHlA++ g++++v +Ll + l +++ pg00259 79 NGLNGLHLASKEGHVKMVVELLHKEIILETTTK 111 PF00023.20.fs: domain 2 of 23, from 112 to 144: score 42.5, E = 7.3e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aal g+ evv++L+++GA++naq pg00259 112 KGNTALHIAALAGQDEVVRELVNYGANVNAQSQ 144 PF00023.20.ls: domain 2 of 22, from 112 to 144: score 44.5, E = 3.4e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aal g+ evv++L+++GA++naq pg00259 112 KGNTALHIAALAGQDEVVRELVNYGANVNAQSQ 144 PF00023.20.fs: domain 3 of 23, from 145 to 177: score 41.6, E = 1.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPL +Aa+ ++levvk+Ll++GA+ n+ + pg00259 145 KGFTPLYMAAQENHLEVVKFLLENGANQNVATE 177 PF00023.20.ls: domain 3 of 22, from 145 to 177: score 43.6, E = 6.1e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPL +Aa+ ++levvk+Ll++GA+ n+ + pg00259 145 KGFTPLYMAAQENHLEVVKFLLENGANQNVATE 177 PF00023.20.ls: domain 4 of 22, from 178 to 204: score 11.8, E = 0.58 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dGfTPL +A + g+++vv L++ ++ pg00259 178 DGFTPLAVALQQGHENVVAHLIN------YGTK 204 PF00023.20.fs: domain 4 of 23, from 178 to 202: score 21.6, E = 4.8e-05 *->dGfTPLHlAalrgnlevvklLlsqG<-* dGfTPL +A + g+++vv L+++G pg00259 178 DGFTPLAVALQQGHENVVAHLINYG 202 PF00023.20.ls: domain 5 of 22, from 207 to 239: score 13.3, E = 0.34 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +LH+Aa++++++ + Ll++ ++++ + pg00259 207 VRLPALHIAARNDDTRTAAVLLQNDPNPDVLSK 239 PF00023.20.fs: domain 5 of 23, from 211 to 239: score 13.5, E = 0.009 *->PLHlAalrgnlevvklLlsqGAdlnaqdd<-* +LH+Aa++++++ + Ll++ ++++ + pg00259 211 ALHIAARNDDTRTAAVLLQNDPNPDVLSK 239 PF00023.20.ls: domain 6 of 22, from 240 to 272: score 39.3, E = 1.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPLH+Aa++ nl+v++lLl++GA++n + pg00259 240 TGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQ 272 PF00023.20.fs: domain 6 of 23, from 240 to 268: score 37.4, E = 1.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdln<-* GfTPLH+Aa++ nl+v++lLl++GA++n pg00259 240 TGFTPLHIAAHYENLNVAQLLLNRGASVN 268 PF00023.20.fs: domain 7 of 23, from 273 to 305: score 41.7, E = 1.2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPLH+A++rgn+ +v+lLl++GA + +++ pg00259 273 NGITPLHIASRRGNVIMVRLLLDRGAQIETKTK 305 PF00023.20.ls: domain 7 of 22, from 273 to 305: score 43.7, E = 5.9e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPLH+A++rgn+ +v+lLl++GA + +++ pg00259 273 NGITPLHIASRRGNVIMVRLLLDRGAQIETKTK 305 PF00023.20.fs: domain 8 of 23, from 306 to 338: score 39.5, E = 4.9e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPLH+Aa++g++++ + Ll++GA + a+++ pg00259 306 DELTPLHCAARNGHVRISEILLDHGAPIQAKTK 338 PF00023.20.ls: domain 8 of 22, from 306 to 338: score 41.5, E = 2.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPLH+Aa++g++++ + Ll++GA + a+++ pg00259 306 DELTPLHCAARNGHVRISEILLDHGAPIQAKTK 338 PF00023.20.fs: domain 9 of 23, from 339 to 371: score 30.0, E = 2.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G +P+H+Aa+ ++l++v+lLl++ A+++ + pg00259 339 NGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITL 371 PF00023.20.ls: domain 9 of 22, from 339 to 371: score 32.0, E = 2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G +P+H+Aa+ ++l++v+lLl++ A+++ + pg00259 339 NGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITL 371 PF00023.20.ls: domain 10 of 22, from 372 to 404: score 40.0, E = 7.5e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPLH+Aa++g+++v+k Ll++GA +n + pg00259 372 DHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRAL 404 PF00023.20.fs: domain 10 of 23, from 372 to 404: score 38.0, E = 1.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPLH+Aa++g+++v+k Ll++GA +n + pg00259 372 DHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRAL 404 PF00023.20.ls: domain 11 of 22, from 405 to 437: score 48.8, E = 1.7e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +GfTPLH+A+++++++v++lLl+ GA+++a++ pg00259 405 NGFTPLHIACKKNHVRVMELLLKTGASIDAVTE 437 PF00023.20.fs: domain 11 of 23, from 405 to 437: score 46.8, E = 4.5e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +GfTPLH+A+++++++v++lLl+ GA+++a++ pg00259 405 NGFTPLHIACKKNHVRVMELLLKTGASIDAVTE 437 PF00023.20.ls: domain 12 of 22, from 438 to 470: score 44.7, E = 2.8e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+A+++g+l +vk Ll++GA++n+ + pg00259 438 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV 470 PF00023.20.fs: domain 12 of 23, from 438 to 470: score 42.7, E = 6.2e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+A+++g+l +vk Ll++GA++n+ + pg00259 438 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV 470 PF00023.20.ls: domain 13 of 22, from 471 to 503: score 37.0, E = 6.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH+Aa+ g++ev+k+Ll++ A +na+ + pg00259 471 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 503 PF00023.20.fs: domain 13 of 23, from 473 to 503: score 35.3, E = 7.3e-09 *->fTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH+Aa+ g++ev+k+Ll++ A +na+ + pg00259 473 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 503 PF00023.20.fs: domain 14 of 23, from 504 to 536: score 42.9, E = 5.5e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+Aa+ g++++vklLl++ A++n+ + pg00259 504 DDQTPLHCAARIGHTNMVKLLLENNANPNLATT 536 PF00023.20.ls: domain 14 of 22, from 504 to 536: score 44.9, E = 2.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+Aa+ g++++vklLl++ A++n+ + pg00259 504 DDQTPLHCAARIGHTNMVKLLLENNANPNLATT 536 PF00023.20.ls: domain 15 of 22, from 537 to 569: score 28.3, E = 2.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+Aa+ g++e v Ll++ A+ ++ pg00259 537 AGHTPLHIAAREGHVETVLALLEKEASQACMTK 569 PF00023.20.fs: domain 15 of 23, from 537 to 569: score 26.3, E = 2.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLH+Aa+ g++e v Ll++ A+ ++ pg00259 537 AGHTPLHIAAREGHVETVLALLEKEASQACMTK 569 PF00023.20.ls: domain 16 of 22, from 570 to 602: score 40.9, E = 4.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPLH+Aa++g ++v++lLl++ A +na + pg00259 570 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 602 PF00023.20.fs: domain 16 of 23, from 570 to 602: score 38.9, E = 7.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPLH+Aa++g ++v++lLl++ A +na + pg00259 570 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 602 PF00023.20.ls: domain 17 of 22, from 603 to 635: score 36.9, E = 6.4e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPLH+A++++nl++vklLl +G +++ pg00259 603 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 635 PF00023.20.fs: domain 17 of 23, from 603 to 635: score 34.9, E = 9.4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPLH+A++++nl++vklLl +G +++ pg00259 603 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 635 PF00023.20.ls: domain 18 of 22, from 636 to 668: score 38.1, E = 2.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+ +++ev++ Ll++G + na pg00259 636 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 668 PF00023.20.fs: domain 18 of 23, from 636 to 668: score 36.1, E = 4.4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+Aa+ +++ev++ Ll++G + na pg00259 636 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 668 PF00023.20.fs: domain 19 of 23, from 669 to 701: score 36.9, E = 2.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlAa+ g++e+v lLls+ A+ n+ ++ pg00259 669 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 701 PF00023.20.ls: domain 19 of 22, from 669 to 701: score 38.9, E = 1.6e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlAa+ g++e+v lLls+ A+ n+ ++ pg00259 669 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 701 PF00023.20.ls: domain 20 of 22, from 702 to 734: score 32.8, E = 1.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHl a+ g++ v+ L+++G ++a+++ pg00259 702 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 734 PF00023.20.fs: domain 20 of 23, from 702 to 734: score 30.8, E = 1.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHl a+ g++ v+ L+++G ++a+++ pg00259 702 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 734 PF00023.20.ls: domain 21 of 22, from 735 to 767: score 49.1, E = 1.3e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+A+++gn+++vk+Ll++ Ad+na+++ pg00259 735 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 767 PF00023.20.fs: domain 21 of 23, from 735 to 767: score 47.1, E = 3.7e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLH+A+++gn+++vk+Ll++ Ad+na+++ pg00259 735 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 767 PF00023.20.ls: domain 22 of 22, from 768 to 800: score 40.1, E = 7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++PLH Aa+ g++++v+lLl++GA++n + pg00259 768 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 800 PF00023.20.fs: domain 22 of 23, from 768 to 800: score 38.1, E = 1.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++PLH Aa+ g++++v+lLl++GA++n + pg00259 768 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 800 PF00023.20.fs: domain 23 of 23, from 801 to 821: score 4.5, E = 2.9 *->dGfTPLHlAalrgnlevvklL<-* dG TPL +A + g+++v L pg00259 801 DGTTPLAIAKRLGYISVTDVL 821 PF00791.10.fs: domain 1 of 1, from 954 to 1058: score 230.8, E = 2.8e-66 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk t+flvs+++darGGs+rg+rH+G++++IPp++++++tr+tc+lvk++ pg00259 954 TGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQ 1000 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe k+stpPPl +e+e+L+S+i+++GPtGa+Fl+PVi+e+PH+As+ ++++e pg00259 1001 KLSTPPPL--AEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRE 1048 lvlLrsdngg<-* lv+Lrs+ng+ pg00259 1049 LVVLRSENGS 1058 PF00791.10.ls: domain 1 of 1, from 954 to 1058: score 232.8, E = 7.1e-67 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk t+flvs+++darGGs+rg+rH+G++++IPp++++++tr+tc+lvk++ pg00259 954 TGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQ 1000 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe k+stpPPl +e+e+L+S+i+++GPtGa+Fl+PVi+e+PH+As+ ++++e pg00259 1001 KLSTPPPL--AEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRE 1048 lvlLrsdngg<-* lv+Lrs+ng+ pg00259 1049 LVVLRSENGS 1058 PF00531.12.ls: domain 1 of 1, from 1447 to 1530: score 93.6, E = 5.4e-25 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt e+ +a++ +e+lg +W eLAr+L +s ++I++i+ enp++l +++ pg00259 1447 EMKMAVI--SEHLGLSWAELARELQFSVEDINRIRV-ENPNSLLEQS 1490 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* ++LL+lW +r+G+na++++L++aL++++r +++ +le + pg00259 1491 VALLNLWVIREGQNANMENLYTALQSIDRGEIVNMLEGSG 1530 PF00531.12.fs: domain 1 of 1, from 1447 to 1530: score 91.7, E = 1.7e-24 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt e+ +a++ +e+lg +W eLAr+L +s ++I++i+ enp++l +++ pg00259 1447 EMKMAVI--SEHLGLSWAELARELQFSVEDINRIRV-ENPNSLLEQS 1490 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* ++LL+lW +r+G+na++++L++aL++++r +++ +le + pg00259 1491 VALLNLWVIREGQNANMENLYTALQSIDRGEIVNMLEGSG 1530 //