hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-08472842/chunk_1/iprscan-20080813-08472842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00259 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 716.3 8e-211 23 SM00218 215.6 4.3e-60 1 SM00005 111.0 1.3e-28 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/23 46 75 .. 1 30 [] 0.2 4.4e+03 SM00248 2/23 79 108 .. 1 30 [] 15.9 5.7 SM00248 3/23 112 141 .. 1 30 [] 39.2 5.5e-07 SM00248 4/23 145 174 .. 1 30 [] 41.0 1.6e-07 SM00248 5/23 178 206 .. 1 30 [] 18.7 0.83 SM00248 6/23 207 236 .. 1 30 [] 17.1 2.6 SM00248 7/23 240 269 .. 1 30 [] 35.4 7.5e-06 SM00248 8/23 273 302 .. 1 30 [] 33.8 2.3e-05 SM00248 9/23 306 335 .. 1 30 [] 31.3 0.00014 SM00248 10/23 339 368 .. 1 30 [] 35.9 5.6e-06 SM00248 11/23 372 401 .. 1 30 [] 34.8 1.2e-05 SM00248 12/23 405 434 .. 1 30 [] 41.4 1.2e-07 SM00248 13/23 438 467 .. 1 30 [] 34.4 1.5e-05 SM00248 14/23 471 500 .. 1 30 [] 34.3 1.6e-05 SM00248 15/23 504 533 .. 1 30 [] 40.0 3.3e-07 SM00248 16/23 537 566 .. 1 30 [] 30.1 0.00031 SM00248 17/23 570 599 .. 1 30 [] 33.2 3.6e-05 SM00248 18/23 603 632 .. 1 30 [] 37.5 1.8e-06 SM00248 19/23 636 665 .. 1 30 [] 34.1 1.9e-05 SM00248 20/23 669 700 .. 1 30 [] 29.5 0.00048 SM00248 21/23 702 731 .. 1 30 [] 25.8 0.0058 SM00248 22/23 735 764 .. 1 30 [] 40.2 2.8e-07 SM00248 23/23 768 797 .. 1 30 [] 32.7 5e-05 SM00218 1/1 954 1058 .. 1 115 [] 215.6 4.3e-60 SM00005 1/1 1436 1530 .. 1 108 [] 111.0 1.3e-28 Alignments of top-scoring domains: SM00248: domain 1 of 23, from 46 to 75: score 0.2, E = 4.4e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* d T + Aa++gnl+ + l++g+din pg00259 46 DAATSFLRAARSGNLDKALDHLRNGVDINT 75 SM00248: domain 2 of 23, from 79 to 108: score 15.9, E = 5.7 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G + LHlA ++g++++v +Ll k ++ pg00259 79 NGLNGLHLASKEGHVKMVVELLHKEIILET 108 SM00248: domain 3 of 23, from 112 to 141: score 39.2, E = 5.5e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+LH+Aa g+ evv++L+++ga++na pg00259 112 KGNTALHIAALAGQDEVVRELVNYGANVNA 141 SM00248: domain 4 of 23, from 145 to 174: score 41.0, E = 1.6e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpL++Aa++++levvk+Ll++ga+ n+ pg00259 145 KGFTPLYMAAQENHLEVVKFLLENGANQNV 174 SM00248: domain 5 of 23, from 178 to 206: score 18.7, E = 0.83 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+TpL +A + g+++vv +L+++g + + pg00259 178 DGFTPLAVALQQGHENVVAHLINYG-TKGK 206 SM00248: domain 6 of 23, from 207 to 236: score 17.1, E = 2.6 *->dGrTpLHlAaengnlevvklLldkgadina<-* +LH+Aa+n++ ++ Ll++++++++ pg00259 207 VRLPALHIAARNDDTRTAAVLLQNDPNPDV 236 SM00248: domain 7 of 23, from 240 to 269: score 35.4, E = 7.5e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa + nl+v++lLl++ga++n pg00259 240 TGFTPLHIAAHYENLNVAQLLLNRGASVNF 269 SM00248: domain 8 of 23, from 273 to 302: score 33.8, E = 2.3e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G TpLH+A ++gn+ +v+lLld+ga i+ pg00259 273 NGITPLHIASRRGNVIMVRLLLDRGAQIET 302 SM00248: domain 9 of 23, from 306 to 335: score 31.3, E = 0.00014 *->dGrTpLHlAaengnlevvklLldkgadina<-* d TpLH+Aa+ng++ + ++Lld+ga i a pg00259 306 DELTPLHCAARNGHVRISEILLDHGAPIQA 335 SM00248: domain 10 of 23, from 339 to 368: score 35.9, E = 5.6e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G +p+H+Aa+ ++l++v+lLl+++a+i++ pg00259 339 NGLSPIHMAAQGDHLDCVRLLLQYDAEIDD 368 SM00248: domain 11 of 23, from 372 to 401: score 34.8, E = 1.2e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* d TpLH+Aa g++ v+k Lldkga +n pg00259 372 DHLTPLHVAAHCGHHRVAKVLLDKGAKPNS 401 SM00248: domain 12 of 23, from 405 to 434: score 41.4, E = 1.2e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+A++++++ v++lLl+ ga+i+a pg00259 405 NGFTPLHIACKKNHVRVMELLLKTGASIDA 434 SM00248: domain 13 of 23, from 438 to 467: score 34.4, E = 1.5e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G TpLH+A g+l +vk Ll++ga++n+ pg00259 438 SGLTPLHVASFMGHLPIVKNLLQRGASPNV 467 SM00248: domain 14 of 23, from 471 to 500: score 34.3, E = 1.6e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* TpLH+Aa+ g+ ev+k+Ll+++a +na pg00259 471 KVETPLHMAARAGHTEVAKYLLQNKAKVNA 500 SM00248: domain 15 of 23, from 504 to 533: score 40.0, E = 3.3e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* d++TpLH+Aa+ g+ ++vklLl+++a++n+ pg00259 504 DDQTPLHCAARIGHTNMVKLLLENNANPNL 533 SM00248: domain 16 of 23, from 537 to 566: score 30.1, E = 0.00031 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa++g++e+v +Ll+k a+ + pg00259 537 AGHTPLHIAAREGHVETVLALLEKEASQAC 566 SM00248: domain 17 of 23, from 570 to 599: score 33.2, E = 3.6e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa++g + v++lLl+++a +na pg00259 570 KGFTPLHVAAKYGKVRVAELLLERDAHPNA 599 SM00248: domain 18 of 23, from 603 to 632: score 37.5, E = 1.8e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G TpLH+A+ ++nl++vklLl +g++++ pg00259 603 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 632 SM00248: domain 19 of 23, from 636 to 665: score 34.1, E = 1.9e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+Aa+ +++ev++ Ll++g++ na pg00259 636 NGYTPLHIAAKQNQVEVARSLLQYGGSANA 665 SM00248: domain 20 of 23, from 669 to 700: score 29.5, E = 0.00048 *->dGrTpLHlAaengnlevvklLldkga..dina<-* +G TpLHlAa++g+ e+v lLl+k a++++ pg00259 669 QGVTPLHLAAQEGHAEMVALLLSKQAngNLGN 700 SM00248: domain 21 of 23, from 702 to 731: score 25.8, E = 0.0058 *->dGrTpLHlAaengnlevvklLldkgadina<-* G TpLHl a++g++ v+ L+++g+ ++a pg00259 702 SGLTPLHLVAQEGHVPVADVLIKHGVMVDA 731 SM00248: domain 22 of 23, from 735 to 764: score 40.2, E = 2.8e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+A +gn+++vk+Ll++ ad+na pg00259 735 MGYTPLHVASHYGNIKLVKFLLQHQADVNA 764 SM00248: domain 23 of 23, from 768 to 797: score 32.7, E = 5e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G++pLH Aa+ g+ ++v lLl++ga++n+ pg00259 768 LGYSPLHQAAQQGHTDIVTLLLKNGASPNE 797 SM00218: domain 1 of 1, from 954 to 1058: score 215.6, E = 4.3e-60 *->psflvsgtvdsrGGrLrgprHsGvrliiPpgAipqGtryecYlvvhk ++flvs++vd+rGG++rg+rH+G+r++iPp++++++tr++c+lv+++ pg00259 954 TGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQ 1000 klstpPPLDkeegEtLLSPvvecGPCDVSmSAhGalllrPViLevpHCAs klstpPPL +e+E+L+S+++++GP +Ga++l+PVi+e+pH+As pg00259 1001 KLSTPPPL--AEEEGLASRIIALGP-------TGAQFLSPVIVEIPHFAS 1041 lrprdkwelvllrsengg<-* + ++d +elv+lrseng+ pg00259 1042 HGRGD-RELVVLRSENGS 1058 SM00005: domain 1 of 1, from 1436 to 1530: score 111.0, E = 1.3e-28 *->pagaaslteltreklaklldhpldlgddWreLArkLglseaeidqie +g+ s te++++k+a++ +h lg +W+eLAr+L++s ++i++i+ pg00259 1436 TPGSLSGTEQAEMKMAVISEH---LGLSWAELARELQFSVEDINRIR 1479 tesprelnAyyeddlreqsyqlLrlWeqregkneqatlgtLleaLrkmgr +e+p+ +l eqs++lL+lW++reg n a+ ++L+ aL+++ r pg00259 1480 VENPN--------SLLEQSVALLNLWVIREGQN--ANMENLYTALQSIDR 1519 ddavellrsel<-* ++v +l+++ pg00259 1520 GEIVNMLEGSG 1530 //