hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-08534954/chunk_1/iprscan-20080813-08534954.nocrc
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Query sequence: pg00376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00850.10.fs Histone deacetylase domain                 85.2    4.3e-24   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00850.10.fs   1/1       8    99 ..   245   347 .]    85.2  4.3e-24

Alignments of top-scoring domains:
PF00850.10.fs: domain 1 of 1, from 8 to 99: score 85.2, E = 4.3e-24
                   *->GtdDesYleafktiiepvleqFkPdaivvsaGfDalegDptmqLgsf
                      G+++++Y +af + + p++ +F+P++++vsaGfD+  gDp    g++
     pg00376     8    GMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDP---EGQM 51   

                   nLTiegygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwial
                   + T+e++++ + +l  la    +g++++VlEGGY+l+     +a +++ +
     pg00376    52 QATPECFAHLTQLLQVLA----GGRVCAVLEGGYHLE----SLAESVCMT 93   

                   tggllg<-*
                      llg   
     pg00376    94 VQTLLG    99   

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