hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-09003921/chunk_1/iprscan-20080813-09003921.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00425 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00057.9.fs Low-density lipoprotein receptor domain 548.0 1.7e-176 11 PF00057.9.ls Low-density lipoprotein receptor domain 567.8 1e-167 11 PF00041.11.fs Fibronectin type III domain 110.5 4.3e-31 6 PF00058.8.fs Low-density lipoprotein receptor repeat 99.2 4.3e-29 5 PF00058.8.ls Low-density lipoprotein receptor repeat 100.7 4e-27 4 PF00041.11.ls Fibronectin type III domain 88.7 1.6e-23 5 PF02012.10.ls BNR/Asp-box repeat 51.9 2e-12 5 PF02012.10.fs BNR/Asp-box repeat 41.9 1.9e-11 5 PF04706.3.fs Dickkopf N-terminal cysteine-rich region 26.3 6.9e-08 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02012.10.ls 1/5 134 145 .. 1 12 [] 11.7 2.5 PF02012.10.ls 2/5 230 241 .. 1 12 [] 13.4 0.75 PF02012.10.ls 3/5 439 450 .. 1 12 [] 7.5 12 PF02012.10.ls 4/5 519 530 .. 1 12 [] 4.3 31 PF02012.10.ls 5/5 560 571 .. 1 12 [] 15.0 0.26 PF00058.8.ls 1/4 798 840 .. 1 47 [] 11.4 0.076 PF00058.8.ls 2/4 842 884 .. 1 47 [] 30.3 6.3e-06 PF00058.8.fs 2/5 842 884 .. 1 47 [] 28.4 9.2e-08 PF00058.8.fs 3/5 886 929 .. 1 47 [] 32.9 4.1e-09 PF00058.8.ls 3/4 886 929 .. 1 47 [] 34.8 2.8e-07 PF00058.8.fs 4/5 931 967 .. 3 45 .. 19.6 4.1e-05 PF00058.8.ls 4/4 931 969 .. 1 47 [] 24.2 0.00043 PF00057.9.ls 1/11 1074 1110 .. 1 40 [] 49.1 1.4e-11 PF00057.9.fs 1/11 1074 1110 .. 1 40 [] 47.2 1.4e-14 PF00057.9.fs 2/11 1113 1151 .. 1 40 [] 40.6 1.9e-12 PF00057.9.ls 2/11 1113 1151 .. 1 40 [] 42.6 1.3e-09 PF00057.9.ls 3/11 1154 1190 .. 1 40 [] 61.6 2.4e-15 PF00057.9.fs 3/11 1154 1190 .. 1 40 [] 59.7 1.3e-18 PF00057.9.ls 4/11 1195 1233 .. 1 40 [] 71.0 3.4e-18 PF00057.9.fs 4/11 1195 1233 .. 1 40 [] 69.1 1.2e-21 PF00057.9.ls 5/11 1235 1269 .. 1 40 [] 56.4 8.5e-14 PF00057.9.fs 5/11 1235 1269 .. 1 40 [] 54.6 5.7e-17 PF00057.9.ls 7/11 1321 1357 .. 1 40 [] 58.0 2.9e-14 PF00057.9.fs 7/11 1321 1357 .. 1 40 [] 56.1 1.8e-17 PF00057.9.fs 8/11 1364 1401 .. 1 40 [] 57.6 5.8e-18 PF00057.9.ls 8/11 1364 1401 .. 1 40 [] 59.6 9.8e-15 PF00057.9.fs 9/11 1415 1451 .. 1 40 [] 59.3 1.7e-18 PF00057.9.ls 9/11 1415 1451 .. 1 40 [] 61.2 3.1e-15 PF00057.9.fs 10/11 1467 1504 .. 1 40 [] 39.2 5.4e-12 PF00057.9.ls 10/11 1467 1504 .. 1 40 [] 41.1 3.5e-09 PF00057.9.fs 11/11 1510 1547 .. 1 40 [] 45.6 4.7e-14 PF00057.9.ls 11/11 1510 1547 .. 1 40 [] 47.5 4.2e-11 PF00041.11.fs 1/6 1553 1626 .. 1 74 [. 34.0 4e-09 PF00041.11.ls 1/5 1553 1634 .. 1 84 [] 33.2 8.2e-07 PF00041.11.ls 2/5 1649 1733 .. 1 84 [] 37.7 3.8e-08 PF00041.11.fs 2/6 1649 1733 .. 1 84 [] 35.7 1.3e-09 PF00041.11.ls 4/5 1929 2010 .. 1 84 [] 15.0 0.0046 Alignments of top-scoring domains: PF02012.10.ls: domain 1 of 5, from 134 to 145: score 11.7, E = 2.5 *->yyStDgGkTWsk<-* y+S+D+Gk+++k pg00425 134 YVSYDYGKSFKK 145 PF02012.10.ls: domain 2 of 5, from 230 to 241: score 13.4, E = 0.75 *->yyStDgGkTWsk<-* + S+D+G+TW + pg00425 230 WKSDDFGQTWIM 241 PF02012.10.ls: domain 3 of 5, from 439 to 450: score 7.5, E = 12 *->yyStDgGkTWsk<-* +++D G TW+ pg00425 439 VITFDKGGTWEF 450 PF02012.10.ls: domain 4 of 5, from 519 to 530: score 4.3, E = 31 *->yyStDgGkTWsk<-* y+S G+ W + pg00425 519 YISSSAGARWRE 530 PF02012.10.ls: domain 5 of 5, from 560 to 571: score 15.0, E = 0.26 *->yyStDgGkTWsk<-* ySt+ G+TW++ pg00425 560 KYSTNEGETWKT 571 PF00058.8.ls: domain 1 of 4, from 798 to 840: score 11.4, E = 0.076 *->grlYWtDsslrkIasisvadlnGsd.rrtlfsededlqhPngIavDp + lYW+D+ l+ i++ lnGs ++ +++++ l++ +++a p pg00425 798 NCLYWSDLALD---VIQRLCLNGSTgQEVIINSG--LETVEALAFEP 839 i<-* pg00425 840 L 840 PF00058.8.ls: domain 2 of 4, from 842 to 884: score 30.3, E = 6.3e-06 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi ++lYW+D++ + +i+va+ +G r t++++ l+ P+++++ p+ pg00425 842 QLLYWVDAGFK---KIEVANPDGDFRLTIVNSS-VLDRPRALVLVPQ 884 <-* pg00425 - - PF00058.8.fs: domain 2 of 5, from 842 to 884: score 28.4, E = 9.2e-08 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi ++lYW+D++ + +i+va+ +G r t++++ l+ P+++++ p+ pg00425 842 QLLYWVDAGFK---KIEVANPDGDFRLTIVNSS-VLDRPRALVLVPQ 884 <-* pg00425 - - PF00058.8.fs: domain 3 of 5, from 886 to 929: score 32.9, E = 4.1e-09 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi g ++WtD++ k + i + +++Gs + l+sed + +PngI vD + pg00425 886 GVMFWTDWGDLK-PGIYRSNMDGSAAYHLVSED--VKWPNGISVDDQ 929 <-* pg00425 - - PF00058.8.ls: domain 3 of 4, from 886 to 929: score 34.8, E = 2.8e-07 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi g ++WtD++ k + i + +++Gs + l+sed + +PngI vD + pg00425 886 GVMFWTDWGDLK-PGIYRSNMDGSAAYHLVSED--VKWPNGISVDDQ 929 <-* pg00425 - - PF00058.8.fs: domain 4 of 5, from 931 to 967: score 19.6, E = 4.1e-05 *->lYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavD<-* +YWtD+ l+ i+++++ G+ r ++ ++ l hP +Iav+ pg00425 931 IYWTDAYLE---CIERITFSGQQ-RSVILDN--LPHPYAIAVF 967 PF00058.8.ls: domain 4 of 4, from 931 to 969: score 24.2, E = 0.00043 *->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi +YWtD+ l+ i+++++ G+ r ++ ++ l hP +Iav+ + pg00425 931 --IYWTDAYLE---CIERITFSGQQ-RSVILDN--LPHPYAIAVFKN 969 <-* pg00425 - - PF00057.9.ls: domain 1 of 11, from 1074 to 1110: score 49.1, E = 1.4e-11 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* +tC +++++C++g CI++ w CD d+DC+D SDE nC pg00425 1074 NTCLRNQYRCSNGN-CINSIWWCDFDNDCGDMSDE--RNC 1110 PF00057.9.fs: domain 1 of 11, from 1074 to 1110: score 47.2, E = 1.4e-14 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* +tC +++++C++g CI++ w CD d+DC+D SDE nC pg00425 1074 NTCLRNQYRCSNGN-CINSIWWCDFDNDCGDMSDE--RNC 1110 PF00057.9.fs: domain 2 of 11, from 1113 to 1151: score 40.6, E = 1.9e-12 *->stCg.pdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* + C+ +F+C+ + CIp s++CD ++DC+D SDE +C pg00425 1113 TICDlDTQFRCQESGTCIPLSYKCDLEDDCGDNSDE--SHC 1151 PF00057.9.ls: domain 2 of 11, from 1113 to 1151: score 42.6, E = 1.3e-09 *->stCg.pdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* + C+ +F+C+ + CIp s++CD ++DC+D SDE +C pg00425 1113 TICDlDTQFRCQESGTCIPLSYKCDLEDDCGDNSDE--SHC 1151 PF00057.9.ls: domain 3 of 11, from 1154 to 1190: score 61.6, E = 2.4e-15 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* +C++de+ C+sg CI +swvCDGd+DC+D+SDE +nC pg00425 1154 HQCRSDEYNCSSGM-CIRSSWVCDGDNDCRDWSDE--ANC 1190 PF00057.9.fs: domain 3 of 11, from 1154 to 1190: score 59.7, E = 1.3e-18 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* +C++de+ C+sg CI +swvCDGd+DC+D+SDE +nC pg00425 1154 HQCRSDEYNCSSGM-CIRSSWVCDGDNDCRDWSDE--ANC 1190 PF00057.9.ls: domain 4 of 11, from 1195 to 1233: score 71.0, E = 3.4e-18 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* tC++ FqC++g+ CIp++w+CDGd DC+DgSDE+++nC pg00425 1195 HTCEASNFQCRNGH-CIPQRWACDGDTDCQDGSDEDPVNC 1233 PF00057.9.fs: domain 4 of 11, from 1195 to 1233: score 69.1, E = 1.2e-21 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* tC++ FqC++g+ CIp++w+CDGd DC+DgSDE+++nC pg00425 1195 HTCEASNFQCRNGH-CIPQRWACDGDTDCQDGSDEDPVNC 1233 PF00057.9.ls: domain 5 of 11, from 1235 to 1269: score 56.4, E = 8.5e-14 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C F+C +g CIp+s++CDG +DC DgSDE ++C pg00425 1235 KKCN--GFRCPNGT-CIPSSKHCDGLRDCSDGSDE--QHC 1269 PF00057.9.fs: domain 5 of 11, from 1235 to 1269: score 54.6, E = 5.7e-17 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C F+C +g CIp+s++CDG +DC DgSDE ++C pg00425 1235 KKCN--GFRCPNGT-CIPSSKHCDGLRDCSDGSDE--QHC 1269 PF00057.9.ls: domain 7 of 11, from 1321 to 1357: score 58.0, E = 2.9e-14 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* + C++ FqC++g CI+ w+CDG +DC+D SDE +nC pg00425 1321 KVCDEFGFQCQNGV-CISLIWKCDGMDDCGDYSDE--ANC 1357 PF00057.9.fs: domain 7 of 11, from 1321 to 1357: score 56.1, E = 1.8e-17 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* + C++ FqC++g CI+ w+CDG +DC+D SDE +nC pg00425 1321 KVCDEFGFQCQNGV-CISLIWKCDGMDDCGDYSDE--ANC 1357 PF00057.9.fs: domain 8 of 11, from 1364 to 1401: score 57.6, E = 5.8e-18 *->stCg.pdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C++ +F+C++g+ CIp++w+CD ++DC+D+SDE ++C pg00425 1364 PNCSrYFQFRCENGH-CIPNRWKCDRENDCGDWSDE--KDC 1401 PF00057.9.ls: domain 8 of 11, from 1364 to 1401: score 59.6, E = 9.8e-15 *->stCg.pdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C++ +F+C++g+ CIp++w+CD ++DC+D+SDE ++C pg00425 1364 PNCSrYFQFRCENGH-CIPNRWKCDRENDCGDWSDE--KDC 1401 PF00057.9.fs: domain 9 of 11, from 1415 to 1451: score 59.3, E = 1.7e-18 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* stC p+ ++C+sg C+ wvCDG +DC+DgSDE e C pg00425 1415 STCLPNYYRCSSGT-CVMDTWVCDGYRDCADGSDE--EAC 1451 PF00057.9.ls: domain 9 of 11, from 1415 to 1451: score 61.2, E = 3.1e-15 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* stC p+ ++C+sg C+ wvCDG +DC+DgSDE e C pg00425 1415 STCLPNYYRCSSGT-CVMDTWVCDGYRDCADGSDE--EAC 1451 PF00057.9.fs: domain 10 of 11, from 1467 to 1504: score 39.2, E = 5.4e-12 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C++ eF C+ + CIp+ ++CDG++DC+Dg DE +nC pg00425 1467 GRCDRFEFECHQPKTCIPNWKRCDGHQDCQDGRDE--ANC 1504 PF00057.9.ls: domain 10 of 11, from 1467 to 1504: score 41.1, E = 3.5e-09 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C++ eF C+ + CIp+ ++CDG++DC+Dg DE +nC pg00425 1467 GRCDRFEFECHQPKTCIPNWKRCDGHQDCQDGRDE--ANC 1504 PF00057.9.fs: domain 11 of 11, from 1510 to 1547: score 45.6, E = 4.7e-14 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* tC++ eFqC++g+ CI s +CDG DC D SDE + C pg00425 1510 LTCMSREFQCEDGEACIVLSERCDGFLDCSDESDE--KAC 1547 PF00057.9.ls: domain 11 of 11, from 1510 to 1547: score 47.5, E = 4.2e-11 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* tC++ eFqC++g+ CI s +CDG DC D SDE + C pg00425 1510 LTCMSREFQCEDGEACIVLSERCDGFLDCSDESDE--KAC 1547 PF00041.11.fs: domain 1 of 6, from 1553 to 1626: score 34.0, E = 4e-09 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +++nl+ t+ s +tl+W +P++ + Y+v yR ++++ w pg00425 1553 VYKVQNLQWTADFSGDVTLTWMRPKkMPSASCVYNVYYR-VVGESIW 1598 keltvpgtttsytltgLkPgteYtvrVq<-* k+l + +++t +l+ LkP+t+Y+v+Vq pg00425 1599 KTLETHSNKTNTVLKVLKPDTTYQVKVQ 1626 PF00041.11.ls: domain 1 of 5, from 1553 to 1634: score 33.2, E = 8.2e-07 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +++nl+ t+ s +tl+W +P++ + Y+v yR ++++ w pg00425 1553 VYKVQNLQWTADFSGDVTLTWMRPKkMPSASCVYNVYYR-VVGESIW 1598 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* k+l + +++t +l+ LkP+t+Y+v+Vq + + pg00425 1599 KTLETHSNKTNTVLKVLKPDTTYQVKVQVQCLS--KAH 1634 PF00041.11.ls: domain 2 of 5, from 1649 to 1733: score 37.7, E = 3.8e-08 *->PsaPtnltvtdv..tstsltlsWspPt.gngpitgYevtyRqpkngg P+aP+nl+ + ++ + ++ +W pP + +g i Y v+y + +++ pg00425 1649 PDAPRNLQLSLPreAEGVIVGHWAPPIhTHGLIREYIVEY-SRSGSK 1694 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ ++ ++++L +t YtvrV+Av+ G G +S pg00425 1695 MWASQRAASNF--TEIKNLLVNTLYTVRVAAVTSRGiGNWS 1733 PF00041.11.fs: domain 2 of 6, from 1649 to 1733: score 35.7, E = 1.3e-09 *->PsaPtnltvtdv..tstsltlsWspPt.gngpitgYevtyRqpkngg P+aP+nl+ + ++ + ++ +W pP + +g i Y v+y + +++ pg00425 1649 PDAPRNLQLSLPreAEGVIVGHWAPPIhTHGLIREYIVEY-SRSGSK 1694 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ ++ ++++L +t YtvrV+Av+ G G +S pg00425 1695 MWASQRAASNF--TEIKNLLVNTLYTVRVAAVTSRGiGNWS 1733 PF00041.11.ls: domain 4 of 5, from 1929 to 2010: score 15.0, E = 0.0046 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge + +P+ l+v ++ ts+++ W+ P + Y + + ++ pg00425 1929 SrLPPRHLHVVHTGKTSVVIKWESPYdSPDQDLLYAIAV-KDLIRKT 1974 wkeltvpgt..ttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++++ v++ ++t +ytl+ L+Pg +Y++ Vq g+ S pg00425 1975 DRSYKVKSRnsTVEYTLNKLEPGGKYHIIVQ--LGN---MS 2010 //