hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-09003921/chunk_1/iprscan-20080813-09003921.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00425 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00602 1187.6 0 1 SM00192 648.6 2e-190 11 SM00135 191.1 1.1e-52 5 SM00060 154.1 1.4e-41 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00602 1/1 122 755 .. 1 735 [] 1187.6 0 SM00135 1/5 778 820 .. 1 51 [] 35.4 8e-06 SM00135 2/5 822 864 .. 1 51 [] 56.6 3.2e-12 SM00135 3/5 865 910 .. 1 51 [] 36.2 4.4e-06 SM00135 4/5 911 951 .. 1 51 [] 49.0 6.2e-10 SM00135 5/5 952 992 .. 1 51 [] 13.9 3.5 SM00192 1/11 1075 1112 .. 1 47 [] 63.7 2.3e-14 SM00192 2/11 1114 1153 .. 1 47 [] 59.3 4.8e-13 SM00192 3/11 1155 1192 .. 1 47 [] 64.5 1.3e-14 SM00192 4/11 1196 1235 .. 1 47 [] 68.5 8.6e-16 SM00192 5/11 1236 1271 .. 1 47 [] 60.6 1.9e-13 SM00192 6/11 1272 1315 .. 1 47 [] 37.6 1.7e-06 SM00192 7/11 1322 1359 .. 1 47 [] 63.2 3.2e-14 SM00192 8/11 1365 1403 .. 1 47 [] 62.7 4.5e-14 SM00192 9/11 1416 1453 .. 1 47 [] 65.5 6.6e-15 SM00192 10/11 1468 1506 .. 1 47 [] 50.5 2.2e-10 SM00192 11/11 1511 1549 .. 1 47 [] 52.3 6.3e-11 SM00060 1/6 1553 1636 .. 1 69 [] 27.4 0.002 SM00060 2/6 1649 1730 .. 1 69 [] 38.5 9.1e-07 SM00060 3/6 1745 1827 .. 1 69 [] 17.3 2.2 SM00060 4/6 1841 1917 .. 1 69 [] 11.1 11 SM00060 5/6 1930 2013 .. 1 69 [] 36.0 5.1e-06 SM00060 6/6 2022 2104 .. 1 69 [] 23.8 0.024 Alignments of top-scoring domains: SM00602: domain 1 of 1, from 122 to 755: score 1187.6, E = 0 *->slllgsvkeSsvYiSeDyGkTfkkitdkgglt.GNrsveviselyis sl l ++k S+vY+S+DyGk+fkki+dk++++ GNrs++vi ++y+s pg00425 122 SLALARPKSSDVYVSYDYGKSFKKISDKLNFGlGNRSEAVIAQFYHS 168 PannskvilvtsvsgerksylfissDeGksfqkfklPfppeisPRllpll Pa+n+++i++++ + +yl+i++D++++ q+f++Pf+ +++ll pg00425 169 PADNKRYIFADA----YAQYLWITFDFCNTLQGFSIPFR------AADLL 208 fHPknpdyvLayskdncekeilsdkEENSGDEEGqFEiFNiteCrDklYv +H+k+++++L++++++++k +l++ pg00425 209 LHSKASNLLLGFDRSHPNK---------------------------QLWK 231 SdDfGktWeeiqerveyceNSPiSiSDCGFawgvkdsgvsdeptlvyiev SdDfG+tW++iqe+v++ F+wg++ + +d+p+++yie+ pg00425 232 SDDFGQTWIMIQEHVKS------------FSWGID--P-YDKPNTIYIER 266 kensgadefSSPYtsteLvssddffqSlrespfviledvygflltdeYlf +e+sg + st+ +s+d+f++ re+++vile+v++f+l+d+Y+f pg00425 267 HEPSG---Y-----STVFRSTDFFQS--RENQEVILEEVRDFQLRDKYMF 306 vavtdeeyg.kDttslklyVSvnrseFamakfPkyhlvkkqdaytIldsd ++++++++g+ +++s++l+VS+ r++++ a+f++ h+++ +y+I+d+ pg00425 307 ATKVVHLLGsEQQSSVQLWVSFGRKPMRAAQFVTRHPIN---EYYIADAS 353 edsvFvhVsennqdgndDKGitgnLyiSdsrGtkFslsleNvnrytgGGA ed+vFv+Vs++ n+ +nLyiS+++G+kFslsleNv++y++GGA pg00425 354 EDQVFVCVSHS----NN----RTNLYISEAEGLKFSLSLENVLYYSPGGA 395 GsDtlvRyfennvyvDFykVeGlkGiyiAnlvsnseeveenkedkklqTv GsDtlvRyf+n++++DF++VeGl+G+yiA+l+++ +++ ++++++v pg00425 396 GSDTLVRYFANEPFADFHRVEGLQGVYIATLING-SMN-----EENMRSV 439 ITFDkGgdWslLraPesdsngkkfnCdlksednCSLHLhlytsqleNpyn ITFDkGg+W++L+aP+ +++g+k+nC+l+++ CSLHL++++sql+N+++ pg00425 440 ITFDKGGTWEFLQAPAFTGYGEKINCELSQG--CSLHLAQRLSQLLNLQL 487 sgmdilSkksApGliiAtGsVGDdsLlsyeepsvFISsDgGetWreifdg ++m+ilSk+sApGliiAtGsVG ++L+s +++v+ISs++G++Wre+++g pg00425 488 RRMPILSKESAPGLIIATGSVG-KNLAS--KTNVYISSSAGARWREALPG 534 pHlyaylDhGGiiVAiehnsDEDDdptnelkYStDeGkTWktYtFtetpv pH+y+++DhGGii Ai+++ ++tnelkYSt+eG+TWkt+ F+e+pv pg00425 535 PHYYTWGDHGGIITAIAQG-----METNELKYSTNEGETWKTFIFSEKPV 579 fvkgllTePgestliftlFGstkereqsswslytvDfkdifNerqCeedD fv+gllTePge++++ft+FGs+ke++ +sw++++v+ +d++ +++C+e+D pg00425 580 FVYGLLTEPGEKSTVFTIFGSNKENV-HSWLILQVNATDAL-GVPCTEND 627 yesWelddekWvyspqGskdgCllGkKeiFkRrkptsvClngrsdydlal y+ W+++de +G ++CllG+K++FkRr+p+++C+ng+ d+d+++ pg00425 628 YKLWSPSDE------RG--NECLLGHKTVFKRRTPHATCFNGE-DFDRPV 668 vssaCeKCTreDFECDfgFkrssdGtslevCvpdpelfsanpldppkkcs v+s+C+ CTreD+ECDfgFk+s ++ slevCvpdpe fs++ ++pp++c+ pg00425 669 VVSNCS-CTREDYECDFGFKMS-EDLSLEVCVPDPE-FSGKSYSPPVPCP 715 dgqeylqstGYRKipgdkCeGGdvkldlegepkkCPgkee<-* +g++y++++GYRKi+gd+C GGdv+ +lege+ +CP++ee pg00425 716 VGSTYRRTRGYRKISGDTCSGGDVEARLEGELVPCPLAEE 755 SM00135: domain 1 of 5, from 778 to 820: score 35.4, E = 8e-06 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++l +gl+ + l++D+ ++ lYW+D +ld +I r l pg00425 778 EQLPLTGLrAAVA-LDFDYEHN--CLYWSDLALD------VIQRLCL 815 dGtnr<-* +G++ pg00425 816 NGSTG 820 SM00135: domain 2 of 5, from 822 to 864: score 56.6, E = 3.2e-12 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl +v+++sgl+++++ lA+ ++++ +lYW+D+g + kIe+an pg00425 822 EVIINSGLeTVEA-LAFEPLSQ--LLYWVDAGFK------KIEVANP 859 dGtnr<-* dG +r pg00425 860 DGDFR 864 SM00135: domain 3 of 5, from 865 to 910: score 36.2, E = 4.4e-06 *->rvlvss.gl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeran ++v+s+ l+ Pr+ l++ + eg ++WtDwg k+ I+r+n pg00425 865 LTIVNSsVLdRPRA-LVLVPQEG--VMFWTDWGDL----KPGIYRSN 904 ldGtnr<-* +dG+ pg00425 905 MDGSAA 910 SM00135: domain 4 of 5, from 911 to 951: score 49.0, E = 6.2e-10 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl + lvs++++wP+g + vD ++ ++YWtD++l+ Ier+++ pg00425 911 YHLVSEDVkWPNG-ISVD--DQ--WIYWTDAYLE------CIERITF 946 dGtnr<-* G+ r pg00425 947 SGQQR 951 SM00135: domain 5 of 5, from 952 to 992: score 13.9, E = 3.5 *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl ++ ++l++P A+ ++++ +YW Dw++ ++ +++++ pg00425 952 -SVILDNLpHP---YAIAVFKN--EIYWDDWSQL-----SIFRASKY 987 dGtnr<-* G+ pg00425 988 SGSQM 992 SM00192: domain 1 of 11, from 1075 to 1112: score 63.7, E = 2.3e-14 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC + +++C+ng+CI++ w+CD d+DCgD SDE +nCp+ pg00425 1075 TCLRN---QYRCSNGNCINSIWWCDFDNDCGDMSDE------RNCPT 1112 <-* pg00425 - - SM00192: domain 2 of 11, from 1114 to 1153: score 59.3, E = 4.8e-13 *->tCspgepneFqCg.ngrCIplswvCDGddDCgDGSDEdpaidpenCp C+ + ++F+C+++g+CIpls++CD +dDCgD+SDE +C+ pg00425 1114 ICDLD--TQFRCQeSGTCIPLSYKCDLEDDCGDNSDE------SHCE 1152 s<-* pg00425 1153 M 1153 SM00192: domain 3 of 11, from 1155 to 1192: score 64.5, E = 1.3e-14 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps +C+++ e+ C++g CI +swvCDGd+DC D+SDE +nC+ pg00425 1155 QCRSD---EYNCSSGMCIRSSWVCDGDNDCRDWSDE------ANCTA 1192 <-* pg00425 - - SM00192: domain 4 of 11, from 1196 to 1235: score 68.5, E = 8.6e-16 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC ++ FqC+ng+CIp++w CDGd DC DGSDEdp nC++ pg00425 1196 TCEAS---NFQCRNGHCIPQRWACDGDTDCQDGSDEDP----VNCEK 1235 <-* pg00425 - - SM00192: domain 5 of 11, from 1236 to 1271: score 60.6, E = 1.9e-13 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps +C+ F+C+ng+CIp+s++CDG DC+DGSDE ++C++ pg00425 1236 KCN-----GFRCPNGTCIPSSKHCDGLRDCSDGSDE------QHCEP 1271 <-* pg00425 - - SM00192: domain 6 of 11, from 1272 to 1315: score 37.6, E = 1.7e-06 *->tCspgepneFqCgngr.CIplswvCDGddDCgDGSDEdpaidpenCp C+ F C+n+++C+ s vCDG C DGSDEd a+ ++C+ pg00425 1272 LCTHFM--DFVCKNRQqCLFHSMVCDGIIQCRDGSDEDAAF--AGCS 1314 s<-* + pg00425 1315 Q 1315 SM00192: domain 7 of 11, from 1322 to 1359: score 63.2, E = 3.2e-14 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps C++ FqC+ng CI+l w+CDG dDCgD SDE +nC++ pg00425 1322 VCDEF---GFQCQNGVCISLIWKCDGMDDCGDYSDE------ANCEN 1359 <-* pg00425 - - SM00192: domain 8 of 11, from 1365 to 1403: score 62.7, E = 4.5e-14 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps Cs +F+C ng+CIp++w+CD+++DCgD+SDE ++C++ pg00425 1365 NCSRY--FQFRCENGHCIPNRWKCDRENDCGDWSDE------KDCGD 1403 <-* pg00425 - - SM00192: domain 9 of 11, from 1416 to 1453: score 65.5, E = 6.6e-15 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC p+ ++C++g+C+ +wvCDG+ DC+DGSDE e Cp pg00425 1416 TCLPN---YYRCSSGTCVMDTWVCDGYRDCADGSDE------EACPL 1453 <-* pg00425 - - SM00192: domain 10 of 11, from 1468 to 1506: score 50.5, E = 2.2e-10 *->tCspgepneFqCg.ngrCIplswvCDGddDCgDGSDEdpaidpenCp +C+ eF C++ ++CIp++++CDG+ DC DG DE +nCp pg00425 1468 RCDRF---EFECHqPKTCIPNWKRCDGHQDCQDGRDE------ANCP 1505 s<-* + pg00425 1506 T 1506 SM00192: domain 11 of 11, from 1511 to 1549: score 52.3, E = 6.3e-11 *->tCspgepneFqCgngr.CIplswvCDGddDCgDGSDEdpaidpenCp tC + eFqC +g+ CI ls +CDG DC+D SDE + C+ pg00425 1511 TCMSR---EFQCEDGEaCIVLSERCDGFLDCSDESDE------KACS 1548 s<-* + pg00425 1549 D 1549 SM00060: domain 1 of 6, from 1553 to 1636: score 27.4, E = 0.002 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY ++n l++t+ s vtl+W +P++ ++ + + v+Y pg00425 1553 VYKVQN---LQWTADFSG------DVTLTWMRPkkmpsascvyNVYY 1590 r..................ytltgLkPgaepwteYefrVrAvngndaGeg r+++++ +++ ++ +++++ +l+ LkP+ t+Y+++V++ ++a pg00425 1591 RvvgesiwktlethsnktnTVLKVLKPD----TTYQVKVQVQCLSKAHNT 1636 <-* pg00425 - - SM00060: domain 2 of 6, from 1649 to 1730: score 38.5, E = 9.1e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY P++P+n l+++ + ++ ++ +W pP + ++ ++iv+Y pg00425 1649 PDAPRN---LQLSLPREAEG----VIVGHWAPPihthglireyIVEY 1688 r................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ + +++ ++ +++L + t Y++rV+Av++ +G+g pg00425 1689 SrsgskmwasqraasnfTEIKNLLVN----TLYTVRVAAVTS--RGIG 1730 * pg00425 - - SM00060: domain 3 of 6, from 1745 to 1827: score 17.3, E = 2.2 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... pP++ +++ + ++++ s+tl+ e + ++++v+ + pg00425 1745 VIPPPD---IHIDSYGENYL----SFTLTMESDikvngyVVNLFwaf 1784 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< ++ ++++++ + +++ ++++ +L+++ t Ye++ +A+++ G + pg00425 1785 dthkqerrtlnfrgsilsHKVGNLTAH----TSYEISAWAKTD--LGDS 1827 -* pg00425 - - SM00060: domain 4 of 6, from 1841 to 1917: score 11.1, E = 11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............i P++Ps l++++++ t v+ +W+ P + ++ + + pg00425 1841 PPAPS----LKAKAINQT------AVECTWTGPrnvvygifyatsfL 1877 vgYr...........ytltgLkPgaepwteYefrVrAvngndaGeg<-* Yr++++ +++ + t+ + + +Y f Vr+v +G++ pg00425 1878 DLYRnpkslttslhnKTVI-VSKD----EQYLFLVRVVVP-YQGPS 1917 SM00060: domain 5 of 6, from 1930 to 2013: score 36.0, E = 5.1e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. pP++ l+v+++++t sv+++We P+++++ + ++ + + pg00425 1930 RLPPRH---LHVVHTGKT------SVVIKWESPydspdqdLLYAIav 1967 .....................ytltgLkPgaepwteYefrVrAvngndaG ++ ++++++ ++++++++++ytl L+Pg +Y++ V+ n pg00425 1968 kdlirktdrsykvksrnstveYTLNKLEPG----GKYHIIVQLGNM--SK 2011 eg<-* + pg00425 2012 DS 2013 SM00060: domain 6 of 6, from 2022 to 2104: score 23.8, E = 0.024 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............. ++P l++ + ++ +v l W+ ++++ +++ +++ pg00425 2022 LSAPDA---LKII-TEND------HVLLFWKSLalkekhfnesrgye 2058 .........ivgYr.......ytltgLkPgaepwteYefrVrAvngndaG + ++ +i+ Y ++++++ +++++Lk g ++Y+f+V+A+ G pg00425 2059 ihmfdsamnITAYLgnttdnfFKISNLKMG----HNYTFTVQARCL--FG 2102 eg<-* pg00425 2103 NQ 2104 //