hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-09074081/chunk_1/iprscan-20080813-09074081.nocrc
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Query sequence: pg00641y1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 140.1    2.3e-37   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1     356   720 ..     1   404 []   140.1  2.3e-37

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 356 to 720: score 140.1, E = 2.3e-37
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                       g+++V  R+    P  + ++s +    + s ++v++++++v++ ++
   pg00641y1   356    IGKVKVMLRI---WPAQGAQRSAE----AMSFLKVdprkkQVILYdp 395  

                   .....................FtFDkVFWrydvddpsasQedVFeevaaP
                     +++++ ++++  +   ++ F FD VF      ++++ Q +V   ++a 
   pg00641y1   396 aagppgsagprraataavpkmFAFDAVF------PQDSEQAEVCSGTVAD 439  

                   LvdsaldGYNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdep
                   +++s+++G  + +IF  G    GK+yTM G +++p            +++
   pg00641y1   440 VLQSVVSGADG-CIFSFGHMSLGKSYTMIGKDSSP------------QSL 476  

                   GiIPRaledlFekide........fsVkvSylEIYNEk...irDLLspsp
                   Gi P a+  lF+ i+e++++++++fsV+vS +E+ + +++++rDLL +  
   pg00641y1   477 GIVPCAISWLFRLIEErrertgtrFSVRVSAVEV-CGRdqsLRDLLAEVA 525  

                   enSksrGkhakqsskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLte
                   ++S ++       +++++ +rEd+                 g + ++ +e
   pg00641y1   526 PGSLQD------TQSPGVYLREDPV---------------CGAQLQNQSE 554  

                   vsVsSaeevlellerGnknRtv..aaTkmNeeSSRSHaiFtitleqkekl
                       +ae +   l+ + + R++++a +   ++ S SH  Ft+++ q +  
   pg00641y1   555 LRAPTAEKAAFYLDAALAARSTsrAGCGEDARRS-SHMLFTLHVYQYRM- 602  

                   epiadektesstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEa
                           e++   g +   +s+L+L+DL   E a+  g   +G+ +  +
   pg00641y1   603 --------EKCGRGGMS-GGRSRLHLIDLGSCEAAA--G--RAGEAA--G 637  

                   qnINkSLlaLGnVInALaddshdsaeseatkqaggkssHIPYRDSKLTrL
                   +   +SL+aLG VI AL++                + +H+PYRD  LT+L
   pg00641y1   638 GPLCLSLSALGSVILALVN----------------GAKHVPYRDHRLTML 671  

                   LQdSL.GGNsKTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<
                   L++SL +  ++T+MIa+vS ++ + +ETlsT + A+R+   + k+a+   
   pg00641y1   672 LRESLaTAGCRTTMIAHVSDAPAQHAETLSTVQLAARIHRLRRKKAKYA  720  

                   -*
                     
   pg00641y1     -    -    

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