hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-09141683/chunk_1/iprscan-20080813-09141683.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pg00680 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00788.13.ls Ras association (RalGDS/AF-6) domain 200.3 4.2e-57 2 PF00788.13.fs Ras association (RalGDS/AF-6) domain 196.4 6.4e-56 2 PF01843.9.ls DIL domain 168.1 2.1e-47 1 PF01843.9.fs DIL domain 166.1 8.1e-47 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 91.4 5e-25 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 93.3 6.7e-25 1 PF00498.16.fs FHA domain 37.9 1.3e-10 1 PF00498.16.ls FHA domain 39.6 1e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00788.13.fs 1/2 27 121 .. 1 97 [] 97.3 4.1e-26 PF00788.13.ls 1/2 27 121 .. 1 97 [] 99.3 1.1e-26 PF00788.13.ls 2/2 234 336 .. 1 97 [] 101.0 3.3e-27 PF00788.13.fs 2/2 234 336 .. 1 97 [] 99.0 1.3e-26 PF00498.16.ls 1/1 414 480 .. 1 94 [] 39.6 1e-08 PF00498.16.fs 1/1 414 480 .. 1 94 [] 37.9 1.3e-10 PF01843.9.fs 1/1 773 879 .. 1 113 [] 166.1 8.1e-47 PF01843.9.ls 1/1 773 879 .. 1 113 [] 168.1 2.1e-47 PF00595.14.ls 1/1 997 1078 .. 1 86 [] 93.3 6.7e-25 PF00595.14.fs 1/1 997 1078 .. 1 86 [] 91.4 5e-25 Alignments of top-scoring domains: PF00788.13.fs: domain 1 of 2, from 27 to 121: score 97.3, E = 4.1e-26 *->dsgvlrVygedgtpgt..yktilvskntTaeeViralLrKfgl..da ++gv+r+y +d ++g+ +k+i+vs++ T+++Vi++l++Kf+ + ++ pg00680 27 FHGVMRFYFQDKAAGNfaTKCIRVSSTATTQDVIETLAEKFRPdmRM 73 ddpedyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLr ++ +y+L + ++ +er +L+ dEkPl +ql++++d+ +rF+L+ pg00680 74 LSSPKYSL-----YEVHVSGER-RLDIDEKPLVVQLNWNKDDREGRFVLK 117 rred<-* + +d pg00680 118 NEND 121 PF00788.13.ls: domain 1 of 2, from 27 to 121: score 99.3, E = 1.1e-26 *->dsgvlrVygedgtpgt..yktilvskntTaeeViralLrKfgl..da ++gv+r+y +d ++g+ +k+i+vs++ T+++Vi++l++Kf+ + ++ pg00680 27 FHGVMRFYFQDKAAGNfaTKCIRVSSTATTQDVIETLAEKFRPdmRM 73 ddpedyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLr ++ +y+L + ++ +er +L+ dEkPl +ql++++d+ +rF+L+ pg00680 74 LSSPKYSL-----YEVHVSGER-RLDIDEKPLVVQLNWNKDDREGRFVLK 117 rred<-* + +d pg00680 118 NEND 121 PF00788.13.ls: domain 2 of 2, from 234 to 336: score 101.0, E = 3.3e-27 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp + g+lr+y ++++p+++yktil+s ++ a+ + ++L+K+gl+ ++p pg00680 234 SGGTLRIYADSLKPNIpYKTILLSTTDPADFAVAEALEKYGLEKENP 280 edyvLvEvsl......vlerggeerrvLpddEkPlqiqlqlkrdaqrsrF +dy++ v+l+++ ++++e+g++e +L+ddE+Plqi++ +++d++ F pg00680 281 KDYCIARVMLppgaqhSDEKGAKEI-ILDDDECPLQIFREWPSDKGILVF 329 lLrrred<-* L+rr++ pg00680 330 QLKRRPP 336 PF00788.13.fs: domain 2 of 2, from 234 to 336: score 99.0, E = 1.3e-26 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp + g+lr+y ++++p+++yktil+s ++ a+ + ++L+K+gl+ ++p pg00680 234 SGGTLRIYADSLKPNIpYKTILLSTTDPADFAVAEALEKYGLEKENP 280 edyvLvEvsl......vlerggeerrvLpddEkPlqiqlqlkrdaqrsrF +dy++ v+l+++ ++++e+g++e +L+ddE+Plqi++ +++d++ F pg00680 281 KDYCIARVMLppgaqhSDEKGAKEI-ILDDDECPLQIFREWPSDKGILVF 329 lLrrred<-* L+rr++ pg00680 330 QLKRRPP 336 PF00498.16.ls: domain 1 of 1, from 414 to 480: score 39.6, E = 1e-08 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf + +G dd +iql+g++i ++H+ ++++dg v pg00680 414 TEVGT-------EKLDDNSIQLFGpGIQPHHCDLTNMDGVV------ 447 rpaqvkefgvylrDlssk.nlnGatfvNgkrlgngepvrLksGdvirlG< ++++ s + t+v g+r+ +e++ L+sG+ +++G pg00680 448 ----------TVTPRSMDaE----TYVEGQRI--SETTMLQSGMKVQFG 480 -* pg00680 - - PF00498.16.fs: domain 1 of 1, from 414 to 480: score 37.9, E = 1.3e-10 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf + +G dd +iql+g++i ++H+ ++++dg v pg00680 414 TEVGT-------EKLDDNSIQLFGpGIQPHHCDLTNMDGVV------ 447 rpaqvkefgvylrDlssk.nlnGatfvNgkrlgngepvrLksGdvirlG< ++++ s + t+v g+r+ +e++ L+sG+ +++G pg00680 448 ----------TVTPRSMDaE----TYVEGQRI--SETTMLQSGMKVQFG 480 -* pg00680 - - PF01843.9.fs: domain 1 of 1, from 773 to 879: score 166.1, E = 8.1e-47 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr qlf+QlF+fiN++lfN+L++++d+++Cs+++G +ir++l+++e W++ pg00680 773 QLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAE 819 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp ++gle+a+d ++L++++Qa +LL ++k+ ++di +i+++C++Ln+ pg00680 820 KQGLELAAD---CHLSRIVQATTLLTMDKYAPDDI---PNINSTCFKLNS 863 aQlykiLtlYkpddye<-* +Ql+++L++Y+++++e pg00680 864 LQLQALLQNYHCAPDE 879 PF01843.9.ls: domain 1 of 1, from 773 to 879: score 168.1, E = 2.1e-47 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr qlf+QlF+fiN++lfN+L++++d+++Cs+++G +ir++l+++e W++ pg00680 773 QLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAE 819 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp ++gle+a+d ++L++++Qa +LL ++k+ ++di +i+++C++Ln+ pg00680 820 KQGLELAAD---CHLSRIVQATTLLTMDKYAPDDI---PNINSTCFKLNS 863 aQlykiLtlYkpddye<-* +Ql+++L++Y+++++e pg00680 864 LQLQALLQNYHCAPDE 879 PF00595.14.ls: domain 1 of 1, from 997 to 1078: score 93.3, E = 6.7e-25 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +vtl+ k++g+G+si+ +++g+++ gi+v++v++G gaA+++Gr pg00680 997 TVTLK---KQNGMGLSIVAAKGAGQdKLGIYVKSVVKG-GAADVDGR 1039 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L aGDq+lsv+G++l++ls+e+a+++++++++ +vtL+v+ pg00680 1040 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSS-VVTLEVA 1078 PF00595.14.fs: domain 1 of 1, from 997 to 1078: score 91.4, E = 5e-25 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +vtl+ k++g+G+si+ +++g+++ gi+v++v++G gaA+++Gr pg00680 997 TVTLK---KQNGMGLSIVAAKGAGQdKLGIYVKSVVKG-GAADVDGR 1039 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L aGDq+lsv+G++l++ls+e+a+++++++++ +vtL+v+ pg00680 1040 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSS-VVTLEVA 1078 //